Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0362
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81119-1|CAB03331.1|  363|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81088-9|CAB03126.1|  335|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL023835-9|CAA19493.2|  397|Caenorhabditis elegans Hypothetical ...    29   4.2  

>Z81119-1|CAB03331.1|  363|Caenorhabditis elegans Hypothetical
           protein T10H4.2 protein.
          Length = 363

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 472 RVSIVSNIY*YVPLLTPLHPCMSIMLVMIFLNVNFNHYTFVATC 603
           +V  V+N+   +P+   ++PC++ M+ MIF+    N    + TC
Sbjct: 289 KVGEVANL---IPMCAAIYPCLNPMIAMIFIKDFSNRIIEIITC 329


>Z81088-9|CAB03126.1|  335|Caenorhabditis elegans Hypothetical
           protein F53F1.9 protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/68 (22%), Positives = 34/68 (50%)
 Frame = +3

Query: 174 YKLILYKLNVNSECKLEYILKRKSLIF*NMICLYTSTLKLSNISLKTVPITRKCMKKYSK 353
           +  ++Y L +N         KR    + N++C+  ST+    + + + PI  +  +K+SK
Sbjct: 254 FAFVVYSLQINQTMN-----KRTFYFYYNILCVIYSTVSAWTLLIFSKPINLQVREKFSK 308

Query: 354 ENPQKTSK 377
            + +K ++
Sbjct: 309 LSSKKVTR 316


>AL023835-9|CAA19493.2|  397|Caenorhabditis elegans Hypothetical
           protein Y37A1B.10 protein.
          Length = 397

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 513 IDTASSLYVHNVSHDFFKC*L*SLYIRGYMFVI 611
           IDT  S Y+HN  ++ +KC   S    GY  V+
Sbjct: 90  IDTIISTYLHNKMYEGYKCWYISRVTHGYFHVL 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,697,307
Number of Sequences: 27780
Number of extensions: 255203
Number of successful extensions: 446
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)