Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0361
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    26   0.34 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.2  
EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    22   5.5  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   7.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.3  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 421 WKLGPRGEPEPTSTCRSARTR 359
           WK  P+G P P+ST  S  T+
Sbjct: 67  WKKSPQGAPSPSSTPSSLPTQ 87


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 510 PPRPRMARVLPSELAASVQSPVPPASLQRSGSWDHVAS 397
           PP P+ A    S    +  +  PP +   SGS   VAS
Sbjct: 12  PPAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVAS 49


>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
           acetylcholinesterase protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 112 PQRLRNRHH 138
           PQRLR RHH
Sbjct: 21  PQRLRIRHH 29


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 409 PRGEPEPTSTCRSARTRSA 353
           P  EP+PT T  S  T+++
Sbjct: 397 PTPEPQPTQTTESEPTQAS 415


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 70  GFDRRRGWRQVCRTPQRLRNRHHHQG 147
           G D++  W + CR  ++L  R +  G
Sbjct: 579 GLDQQNQWCKPCRPREQLTWRRNFHG 604


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 70  GFDRRRGWRQVCRTPQRLRNRHHHQG 147
           G D++  W + CR  ++L  R +  G
Sbjct: 471 GLDQQNQWCKPCRPREQLTWRRNFHG 496


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,089
Number of Sequences: 336
Number of extensions: 3812
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)