Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0361
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 54 1e-08
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 41 1e-04
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 34 0.017
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 31 0.12
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 31 0.12
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 31 0.16
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 29 0.64
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.85
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 28 1.1
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.0
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 27 2.6
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.4
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 27 3.4
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 26 4.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.0
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch... 25 7.9
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual 25 7.9
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 25 7.9
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po... 25 7.9
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 54.4 bits (125), Expect = 1e-08
Identities = 29/104 (27%), Positives = 53/104 (50%)
Frame = +1
Query: 259 VVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAG 438
V+G G + +D+D A ++G+ V N+P AN+ S EL ++ LAR V S L G
Sbjct: 122 VIGCFCIGTNQVDLDFAAERGIAVFNSPYANSRSVAELVIGYIISLARQVGDRSLELHRG 181
Query: 439 RWDRALYTGSELAGQDPRHPWPWRVGREVATRMYAFGMNIIGFD 570
W++ E+ G+ +G +++ A G++++ +D
Sbjct: 182 EWNKVSSGCWEIRGKTLGIIGYGHIGSQLSVLAEAMGLHVVYYD 225
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 41.1 bits (92), Expect = 1e-04
Identities = 25/102 (24%), Positives = 42/102 (41%)
Frame = +1
Query: 256 KVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKA 435
K+ AG +N+DVD A + GV V N P + L + R A +L+
Sbjct: 85 KLFVTGAAGYNNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMCTLRGAREAEQSLRL 144
Query: 436 GRWDRALYTGSELAGQDPRHPWPWRVGREVATRMYAFGMNII 561
G+W + L + G+ +G+ A ++ G I+
Sbjct: 145 GKWRQNLSLTDDPYGKRVGIIGMGAIGKSFAQKILPLGCEIV 186
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 34.3 bits (75), Expect = 0.017
Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 5/131 (3%)
Frame = -2
Query: 581 TRKGSNPMMFMPKAYILVATSRPTRQGQGWRGSCPASSLPVYRARSHLPAFSAVEAGTTW 402
T S P+ + A+S P + +S+ P Y S LP S+V +
Sbjct: 368 TSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPT-SSVSSTPLS 426
Query: 401 RARTNINVQVSSHALSAL----APGALITPTPFLPAES-TSMLSTPAPARPTTFASRLRP 237
A + SS LS++ A A TP + + + TS STP + +T A+
Sbjct: 427 SANSTTATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNSTTATSASS 486
Query: 236 TPLWSLELLNA 204
TPL S+ +A
Sbjct: 487 TPLTSVNSTSA 497
Score = 25.4 bits (53), Expect = 7.9
Identities = 33/133 (24%), Positives = 51/133 (38%)
Frame = -2
Query: 602 TGRTDQQTRKGSNPMMFMPKAYILVATSRPTRQGQGWRGSCPASSLPVYRARSHLPAFSA 423
T + T S P+ + S + Q S SS P S + +A
Sbjct: 241 TSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTA 300
Query: 422 VEAGTTWRARTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFASRL 243
A +T T++N ++ A S P + ++ A STS STP + +T A+
Sbjct: 301 TSASST--PLTSVNSTTTTSASST--PLSSVSSANSTTATSTS--STPLSSVNSTTATSA 354
Query: 242 RPTPLWSLELLNA 204
TPL S+ A
Sbjct: 355 SSTPLTSVNSTTA 367
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 31.5 bits (68), Expect = 0.12
Identities = 24/102 (23%), Positives = 41/102 (40%)
Frame = +1
Query: 256 KVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKA 435
K + GAG + +DV + +G+ V + P A + ++ LML R L
Sbjct: 82 KFICHLGAGYETVDVAACTARGIQVSHVPKAVDDATADVGIFLMLGALRGFNQGIFELHK 141
Query: 436 GRWDRALYTGSELAGQDPRHPWPWRVGREVATRMYAFGMNII 561
W+ + G+ +G+ +A R AF M I+
Sbjct: 142 NNWNANCKPSHDPEGKTLGILGLGGIGKTMAKRARAFDMKIV 183
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 31.5 bits (68), Expect = 0.12
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -2
Query: 476 ASSLPVYRARSHLPAFSAVEAGTTWRARTNINVQVSS-HALSALAPGALITPTPFLPAES 300
+SSLP + S P+ S++ T+ + +V SS H + P L P+ F+ A+
Sbjct: 116 SSSLPSIPSSSSTPSISSIPHTTSSVSNDIPSVLGSSDHPIDLDNPEHLTPPSSFITAKQ 175
Query: 299 TSMLSTPAP 273
S L TP P
Sbjct: 176 LSRLPTPLP 184
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 31.1 bits (67), Expect = 0.16
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 232 GVGRRREAKVVGRAGAGVDNIDVDSAGKKGVGVINAP 342
G+G+++ K + + A +D+I DS G G +N+P
Sbjct: 685 GMGKKQAVKELRKLQAKIDSIIADSMSPMGTGAVNSP 721
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 29.1 bits (62), Expect = 0.64
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = -1
Query: 540 VHPSGHLAADPPRPRMARVLPSELAASVQSPVPPASLQRSGSWDHVASQNQHQRAGQLAR 361
V +G++A PP +++V+P +L A + P+++ S HV ++ R G A
Sbjct: 405 VSGNGNVADAPPDFSLSQVMPLDLIA---PSMQPSAVSSPMSESHVQISSEMPRTGMSAL 461
Query: 360 AQRIGARSVD 331
R +++VD
Sbjct: 462 PMRPRSQNVD 471
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 0.85
Identities = 34/127 (26%), Positives = 53/127 (41%)
Frame = -2
Query: 608 NGTGRTDQQTRKGSNPMMFMPKAYILVATSRPTRQGQGWRGSCPASSLPVYRARSHLPAF 429
+ TG T + T+ GSN M +P L S R+ G R + P S +P S++ +
Sbjct: 927 SSTGLTQEITQLGSN--MRLPTK--LTRPSNDGRKASGPRPAAPPS-IPPPLPVSNILSS 981
Query: 428 SAVEAGTTWRARTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFAS 249
E ++ VS+ S AP A + P P L +++ + A A P S
Sbjct: 982 PTSEPPKDHPPSAPLSKPVST---SPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPS 1038
Query: 248 RLRPTPL 228
P P+
Sbjct: 1039 TAPPVPI 1045
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Frame = -3
Query: 502 AKDGEGLAQRARCQCTEPGPTC-----QPSAQWKLGPRGEP 395
A+D +G A R T P PTC + + W+ P G+P
Sbjct: 614 AEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQP 654
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 371 SSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFASRLRPTP 231
++ A +A P A P P +P + + ++TP A P A+ P P
Sbjct: 352 TTEAAAAQYPQAAFPPPPVMPQPAAAAVTTPV-AAPVAAAAAAVPVP 397
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 208 FSNSSDQRGVGRRREAKVVGRAGAGVDNIDVDSAGKKGVGVINAPG 345
F + R R E+ + A +I+VD+AG++ IN PG
Sbjct: 556 FQEEMENRMNQTRSESSTPAQQSAAGSSINVDTAGRQPSDEINIPG 601
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -2
Query: 461 VYRARSHLPAFSAVEAGTTWRARTNINVQVSSHALSALAPGA 336
+ R R HL + A E T WR + + + LS L P A
Sbjct: 334 IRRLRGHLREYVAWERNTIWREMMAMERRTQAARLSGLKPVA 375
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 169 SYGDTQPRRSGCAFSNSSDQRGVGRRREAKVVGRAGAGVD--NIDVDSAGK 315
+Y +T P+ GC S SD + R+R K + + NI VD A K
Sbjct: 844 AYRETIPQIYGCIISGISDPSTIVRKRAIKQLCEVYEATEDLNIRVDIASK 894
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.2 bits (55), Expect = 4.5
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = -2
Query: 527 ATSRPTRQG-QGWRGSCPASSLPVYRARSHLPAFSAVEAGTTWRARTNINVQVSSHALSA 351
+T P +Q + P S +P SH+ T +R ++N+ S +A S
Sbjct: 491 STKIPKKQHTSAYESRAPQSKVPENLKESHVNE-------TPYRGLHDVNLPASGNASSV 543
Query: 350 LAPGALITPTPFLPAESTSMLSTP 279
A ++ +PA STS S P
Sbjct: 544 SAIPPQVSAQTTIPAASTSATSGP 567
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 341 GALITP-TPFLPAESTSMLSTPAPARPTT 258
G TP TP +P STS STP P T+
Sbjct: 295 GNSTTPVTPTVPPTSTSSTSTPPPPASTS 323
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 341 GALITP-TPFLPAESTSMLSTPAPARPTT 258
G TP TP +P STS STP P T+
Sbjct: 349 GNSTTPVTPTVPPTSTSSTSTPPPPASTS 377
>SPCC1259.06 |||transcription factor TFIID complex subunit 8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 374 VSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTT 258
+ S A+S P ++ P PA T M + P RPT+
Sbjct: 117 LGSLAVSQNRPAYVVNHLPPFPASHTYMATPVYPVRPTS 155
>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = +2
Query: 587 DQCAQFHCTKMELEDIWPLADLHH 658
D C HC L+D +P HH
Sbjct: 29 DNCKTIHCISRSLKDEYPRKIKHH 52
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 465 QRARWAR-PSPSLALAGRPRGGH*DVRLRHEHHRIR 569
+R R+ R PSP + +PRG D+R H+ R
Sbjct: 202 ERNRYGRSPSPHSRFSEKPRGERYDIRSYSRSHKER 237
>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 596
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 558 DVHAEGVHPSGHLAADPPRPRMARVLPSELAASVQSP 448
DVH + P GH + PP + L S+L ++ P
Sbjct: 320 DVHLKLKTPGGHASIPPPHTNIG--LMSKLVTQIEEP 354
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,047
Number of Sequences: 5004
Number of extensions: 59091
Number of successful extensions: 240
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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