Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0361
(699 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12714| Best HMM Match : 2-Hacid_dh (HMM E-Value=2.6e-12) 50 2e-06
SB_7265| Best HMM Match : 2-Hacid_dh (HMM E-Value=0.00052) 40 3e-06
SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39) 37 0.018
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.39
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 32 0.39
SB_4699| Best HMM Match : Lig_chan (HMM E-Value=1.1) 32 0.51
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11) 30 2.1
SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1) 29 3.6
SB_58388| Best HMM Match : Lipocalin (HMM E-Value=7.4) 29 4.8
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42) 29 4.8
SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9) 29 4.8
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 29 4.8
SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_21917| Best HMM Match : CXC (HMM E-Value=0.22) 28 6.3
SB_5193| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_51704| Best HMM Match : F-box (HMM E-Value=3.3e-05) 28 8.4
SB_50132| Best HMM Match : Hydrophobin (HMM E-Value=6.1) 28 8.4
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_19442| Best HMM Match : Beach (HMM E-Value=0) 28 8.4
SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6) 28 8.4
SB_53064| Best HMM Match : Hexapep (HMM E-Value=2.7e-07) 28 8.4
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 28 8.4
SB_45977| Best HMM Match : MBT (HMM E-Value=0) 28 8.4
SB_38912| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69) 28 8.4
>SB_12714| Best HMM Match : 2-Hacid_dh (HMM E-Value=2.6e-12)
Length = 189
Score = 50.0 bits (114), Expect = 2e-06
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Frame = +1
Query: 256 KVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPA-STALK 432
KV+ GAG D ID+ +A K+G+ V N PG ++ L+L ARH+V + K
Sbjct: 70 KVISSIGAGFDRIDIPAATKRGIRVGNTPGVVQDCTADMAIGLLLASARHIVTGDANTRK 129
Query: 433 AGRWDRALYT--GSELAGQDPRHPWPWRVGREVATRMYAFGMNII 561
G +++ G+ + G VG VA R F M I+
Sbjct: 130 PGFTKESIFNCFGTRVTGSTLGIVGLGAVGSAVAMRAKGFKMRIL 174
>SB_7265| Best HMM Match : 2-Hacid_dh (HMM E-Value=0.00052)
Length = 126
Score = 40.3 bits (90), Expect(2) = 3e-06
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +2
Query: 56 VDIKSVLIVDGVGAKCAELLNAYGIATTTKAKISKEELLMEIP 184
+++K VLI D V + C +L G+ K+SKEEL+ EIP
Sbjct: 4 LELKRVLISDSVDSCCKTILERNGVTVDVNTKLSKEELVSEIP 46
Score = 34.3 bits (75), Expect = 0.096
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1
Query: 247 REAKVVGRAGAGVDNIDVDSAGKKGVGVI 333
+ K++GRAG GVDNID +A GV V+
Sbjct: 97 KNLKIIGRAGTGVDNIDTVAASLHGVLVM 125
Score = 28.7 bits (61), Expect(2) = 3e-06
Identities = 11/20 (55%), Positives = 18/20 (90%)
Frame = +2
Query: 188 HDALVVRSATQVTKEVLDAG 247
+D L+VRSAT+V+++V+ AG
Sbjct: 77 YDGLIVRSATKVSEDVIKAG 96
>SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 47.6 bits (108), Expect = 1e-05
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Frame = +1
Query: 256 KVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTAL-K 432
KV+ GAG+DNID+++A ++G+ V N PG + A + L++ AR+V+ A + K
Sbjct: 74 KVISNIGAGIDNIDLEAAKRRGILVGNTPGISDCLA-DFAWALLMAAARNVIQADAMMRK 132
Query: 433 AGRWDRAL--YTGSELAGQDPRHPWPWRVGREVATRMYAFGMNIIGFDPFR 579
G ++ + G+ ++G +G VA R F M I+ ++ R
Sbjct: 133 PGFKIPSIINWHGTRVSGATLGIIGLGNIGLAVAKRAKGFDMRILYYNRTR 183
>SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 41.9 bits (94), Expect = 5e-04
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Frame = +1
Query: 250 EAKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTAL 429
E +V+ AG GVD+ID+ +A +G+ V N PG + L+L AR + + +
Sbjct: 69 ELRVISSAGVGVDHIDLAAATIRGIRVGNTPGVVQECTADHAIGLLLASARKICSGDSVI 128
Query: 430 K-AGRWDRALYT--GSELAGQDPRHPWPWRVGREVATRMYAFGMNII 561
+ G +++ G+++ G VG VA R F M I+
Sbjct: 129 RQPGFSKESIFNSFGTKVTGSTLGIVGLGGVGSAVANRAKGFKMRIL 175
>SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)
Length = 401
Score = 36.7 bits (81), Expect = 0.018
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +1
Query: 457 YTGSELAGQDPRHPWPWRVGREVATRMYAFGMNIIGFDP 573
+ G+EL G+ R+GREVA RM ++G+ IG+DP
Sbjct: 1 FMGNELFGKTLAIIGLGRIGREVALRMQSYGVKTIGYDP 39
Score = 35.1 bits (77), Expect = 0.055
Identities = 22/57 (38%), Positives = 26/57 (45%)
Frame = +2
Query: 479 GKTLAILGLGGSAARWPLGCTPSA*TSSDSTLFVSADQCAQFHCTKMELEDIWPLAD 649
GKTLAI+GLG L + VS A+ + ME E IWPLAD
Sbjct: 8 GKTLAIIGLGRIGREVALRMQSYGVKTIGYDPLVSPQDAAESNIEWMETEKIWPLAD 64
>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 32.3 bits (70), Expect = 0.39
Identities = 21/85 (24%), Positives = 36/85 (42%)
Frame = -2
Query: 521 SRPTRQGQGWRGSCPASSLPVYRARSHLPAFSAVEAGTTWRARTNINVQVSSHALSALAP 342
S P R+ +G R + L A +A AGT +R++ +V ++S + +
Sbjct: 548 SVPRRRAGSAQGRITTKKKTPPRRANLLEALTAAAAGTPAASRSSSSVSLASPGMRSSLG 607
Query: 341 GALITPTPFLPAESTSMLSTPAPAR 267
+TP F P S S + P +
Sbjct: 608 SLQLTPPSFTPRSSISRRRSDTPTK 632
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 32.3 bits (70), Expect = 0.39
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -2
Query: 371 SSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTT 258
SS +++ +L TP+ P+ ST LSTP P++P+T
Sbjct: 196 SSSSITTTKLSSLSTPSLSTPSLSTPSLSTPLPSKPST 233
>SB_4699| Best HMM Match : Lig_chan (HMM E-Value=1.1)
Length = 186
Score = 31.9 bits (69), Expect = 0.51
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 100 VCRTPQRLRNRHHHQGQDLQGRTSYGDTQPR 192
+CR+ + RHHH L G +SYG P+
Sbjct: 113 LCRSKRPYGLRHHHHASGLMGASSYGMAMPK 143
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 329 TPTPFLPAESTSMLSTPAPARPT-TFASRLRPTPLWS 222
TPTP P+ + +TP PA PT T + PTP S
Sbjct: 53 TPTPTTPSPTAPTQTTPTPATPTPTTPTPKTPTPTTS 89
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 329 TPTPFLPAESTSMLSTPAPARPTTFA-SRLRPTP 231
TPTP P +T + P+P PT+ A ++ PTP
Sbjct: 23 TPTPTKPTPTTHTPTKPSPTTPTSTAPTQTTPTP 56
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 329 TPTPFLPAESTSMLSTPAPARPTTFASRLRPTP 231
TPTP P +TS L+ P PA T + +PTP
Sbjct: 78 TPTPKTPTPTTSTLTKPTPA---TTPTPTKPTP 107
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 329 TPTPFLPAESTSMLSTPAPARPT-TFASRLRPTP 231
TPT P ++T +TP+P PT T + PTP
Sbjct: 43 TPTSTAPTQTTPTPTTPSPTAPTQTTPTPATPTP 76
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 326 PTPFLPAESTSMLSTPAPARPTTFASRL-RPTP 231
PT P +T +TP P PT S L +PTP
Sbjct: 64 PTQTTPTPATPTPTTPTPKTPTPTTSTLTKPTP 96
>SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1089
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -1
Query: 552 HAEGVHPSGHLAADP-PRPRMARVLPSE-LAASVQSPVPPASLQRSGS 415
H E HP+ +L A P PR+ R+ E + + SP P GS
Sbjct: 605 HVEAAHPNQNLLASPIMHPRLQRICGEEGMPRRIMSPTSPTLQDHFGS 652
>SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11)
Length = 403
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 365 HALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFASRLRP 237
HA A AP + P P PA STS + TP+P P ++ P
Sbjct: 304 HAPIARAP--IARPLPTSPACSTSRIYTPSPLPPPLLKAKSEP 344
>SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)
Length = 630
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 94 RQVCRTPQRL-RNRHHHQGQDLQGRTSYGDTQPRRSGCAFSNSSDQRG 234
RQ C + + R HHH G + S G+ R+ +NSS RG
Sbjct: 364 RQRCNSVGNIARGGHHHHGNMQRRHPSVGNVSSNRNADHVANSSAPRG 411
>SB_58388| Best HMM Match : Lipocalin (HMM E-Value=7.4)
Length = 246
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 353 ALAPGALITPTPFLPAESTSMLSTPAPARPTTFASRLRPTP 231
A AP + + + P S+ LS+P P P+T +S L P P
Sbjct: 145 AYAPSSTPSSSLLPPPSSSPPLSSPPPPPPSTPSSSLLPPP 185
>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
Length = 1712
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +1
Query: 106 RTPQRLRNRHHHQGQDLQGRTSYGDTQPRRSGCAFSNSSDQRGVGRRREAK 258
R P++L +R H L R D GCA + D G GRRRE +
Sbjct: 720 RDPKQLGSRKHRDPDHLGSRKHKYDDYGA-VGCAEGDVVDPSGRGRRREGR 769
>SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9)
Length = 233
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = -2
Query: 368 SHALSALAPGALITPTPFLPAESTSMLSTPAPARPTT--FASRLRPTPLWSL 219
+H + P + TP F+P + + P P R T +P P+ SL
Sbjct: 104 AHNMGVAGPSGMATPGTFIPPPPPGVFTPPPPYRTTAKPKGPTKKPPPMMSL 155
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -2
Query: 413 GTTWRARTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFASRLRPT 234
GTT T + ++ + +++ +AP + + P + +EST T A TTFA
Sbjct: 1700 GTTLEPETTMALESTVASVTTMAPESTLAPEITIASESTVAPGT-TMAPETTFAPETTKA 1758
Query: 233 PLWSLEL 213
P +L L
Sbjct: 1759 PETTLAL 1765
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +1
Query: 175 GDTQPRRSGCAFSNSSDQRGVGR---RREAKVVGRAGAGVDNIDVDSAGKKGVGVINAPG 345
GD +P+ + S + +RG GR R + GR A + G+ G GV+ A
Sbjct: 785 GDAEPKSETASPSTAEGKRGRGRGRARGRGRTRGRGTAPIRTSRGRGRGRGGTGVMAASA 844
Query: 346 ANALSA 363
A + +A
Sbjct: 845 AASAAA 850
>SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 109 TPQRLRNRHHHQGQDLQG 162
TPQ+L HH++G D+QG
Sbjct: 254 TPQKLPFHHHNKGYDIQG 271
>SB_21917| Best HMM Match : CXC (HMM E-Value=0.22)
Length = 470
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 301 DSAGKKGVGVINAPGANALSACELTCTLML 390
D G+ GV V +APG C++ CT L
Sbjct: 235 DEMGRAGVTVEHAPGDADYKICQMACTYAL 264
>SB_5193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 374 VSSHALSALAPGALITPTPFLPAESTSML 288
+S H L LA G PTP +PA + S+L
Sbjct: 163 LSPHELRLLAKGLKFIPTPPIPASNKSLL 191
>SB_51704| Best HMM Match : F-box (HMM E-Value=3.3e-05)
Length = 337
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 484 DPRHPWP-WRVGREVATRMYAFGMNIIGFDPF 576
DPRH ++VG + R Y +G I G+DPF
Sbjct: 235 DPRHSKVIYKVGMVMRHRRYHYGCVIWGWDPF 266
>SB_50132| Best HMM Match : Hydrophobin (HMM E-Value=6.1)
Length = 114
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = -2
Query: 371 SSHALSALAPG---ALITPTPFLP-AESTSMLSTPAPARPTT 258
S +A +A+A G A +TP+ P A STS + + A ARPTT
Sbjct: 22 SINATTAIATGTFSATVTPSKTSPVAMSTSAVFSTAAARPTT 63
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 101 CAELLNAYGIATTTKAKISKEELLMEIPNHDALVV 205
C L N Y A+T++ K SKE+++ ++ +VV
Sbjct: 3040 CQTLNNTYSPASTSRVKASKEQIISANSSYAEIVV 3074
>SB_19442| Best HMM Match : Beach (HMM E-Value=0)
Length = 796
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -2
Query: 392 TNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFASRLRP 237
T ++V + + + + G L+TP P+LPA ++ T P+T+ P
Sbjct: 492 TCVDVNAALGLVVSGSQGKLLTPFPYLPAAEYTLPLTSRLIHPSTYKPLYTP 543
>SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)
Length = 156
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 347 APGALITPTPFLPAESTSMLSTPAPARPTTF-ASRLRPT 234
AP A +TPT A T + AP PT A+R+ PT
Sbjct: 61 APAAPVTPTAAPAARVTPTAAPAAPVTPTAAPAARVTPT 99
>SB_53064| Best HMM Match : Hexapep (HMM E-Value=2.7e-07)
Length = 585
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = -2
Query: 446 SHLPAFSAVEAGTTWRARTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAPAR 267
S + + S+ GTT + + + ++ + S +APG ++P + A T++ S R
Sbjct: 354 STIASESSAAPGTTESSESTVEPLTTAASESTVAPGTTLSPESTV-APGTTVASEITVTR 412
Query: 266 PTTFAS 249
TT AS
Sbjct: 413 GTTVAS 418
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 27.9 bits (59), Expect = 8.4
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Frame = -2
Query: 629 PPAPSWCNGTGRTDQQTRKG--SNPMMFMPKAYILVATSRPTRQGQGWRGSCPASSLPVY 456
PP + TG + QQTR+ S P + P +A+S Q Q R P S+
Sbjct: 143 PPGSRQMDQTGAS-QQTRQPPRSGPPVQQPYG---MASSGQHAQPQSQR---PVQSIAGS 195
Query: 455 RARSH--LPAFSAVEAGTTWRART---NINVQVSSHALSALAPGALITPTPFLPAESTSM 291
A P + +T +AR + +SSH+ S+ PG+ +P P
Sbjct: 196 TATGQHATPTGHGIPPSSTPQARAPPHSSTQPLSSHSGSSPQPGSAFSPVNTPPNAQAQQ 255
Query: 290 LSTPAPARPTTFASRLRPTP 231
++ P+ A P L+ +P
Sbjct: 256 MTPPSSAAPPQSLPGLQTSP 275
>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
Length = 1198
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 466 CQCTEPGPTCQPSAQWKLGPRGEPEPTSTCRSARTRS 356
C TEP P Q S+ K PE +++ S T S
Sbjct: 168 CSTTEPAPQDQVSSSCKTTETSRPETSTSATSEETNS 204
>SB_38912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 115 QRLRNRHHHQGQDLQGRTSYGDTQPRRSGCAFSNSS 222
+R ++R DL +GD QPRRS F NSS
Sbjct: 87 RRTKSRSSSLKDDLSPFLVFGDWQPRRSERIFINSS 122
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 481 AQRARCQCTEPGPTCQPSAQWKLGPRGEPEPTSTC 377
A ++ C+ T P P+C P++Q+ L PR P + C
Sbjct: 814 AGQSFCEKTSP-PSCIPASQYCLAPRECPPHQTIC 847
>SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)
Length = 404
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 347 APGALITPTPFLPAESTSMLSTPAPARPTTF-ASRLRPT 234
AP A +TPT A T + AP PT A+R+ PT
Sbjct: 218 APAAPVTPTAAPAARVTPTAAPAAPVTPTAAPAARVTPT 256
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,438,644
Number of Sequences: 59808
Number of extensions: 539691
Number of successful extensions: 2108
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2093
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -