Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0361
(699 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g17745.1 68414.m02196 D-3-phosphoglycerate dehydrogenase / 3-... 100 1e-21
At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase, put... 94 7e-20
At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase, put... 92 3e-19
At1g68010.1 68414.m07769 glycerate dehydrogenase / NADH-dependen... 58 4e-09
At5g14780.1 68418.m01734 formate dehydrogenase (FDH) identical t... 55 4e-08
At1g72190.1 68414.m08347 oxidoreductase family protein similar t... 46 2e-05
At1g79870.1 68414.m09330 oxidoreductase family protein contains ... 44 1e-04
At2g45630.2 68415.m05674 oxidoreductase family protein low simil... 40 0.002
At3g28790.1 68416.m03593 expressed protein 33 0.18
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi... 33 0.18
At3g63100.1 68416.m07087 glycine-rich protein 31 0.97
At4g31650.1 68417.m04495 transcriptional factor B3 family protei... 30 1.3
At1g65960.1 68414.m07484 glutamate decarboxylase 2 (GAD 2) simil... 30 1.7
At1g12020.1 68414.m01388 expressed protein 30 1.7
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 29 3.0
At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid t... 29 3.9
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 29 3.9
At2g32235.1 68415.m03939 expressed protein 29 3.9
At1g49870.1 68414.m05591 expressed protein ; expression supporte... 29 3.9
At1g24610.1 68414.m03096 SET domain-containing protein low simil... 29 3.9
At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid t... 28 5.2
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 28 6.8
At5g10690.1 68418.m01237 pentatricopeptide (PPR) repeat-containi... 28 6.8
At4g35240.1 68417.m05009 expressed protein contains Pfam domains... 28 6.8
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 28 6.8
At4g11420.1 68417.m01840 eukaryotic translation initiation facto... 28 6.8
At3g63180.1 68416.m07097 expressed protein 28 6.8
At3g24550.1 68416.m03083 protein kinase family protein contains ... 28 6.8
At4g13600.1 68417.m02117 glycosyl hydrolase family protein 17 si... 27 9.0
At3g48560.1 68416.m05302 acetolactate synthase, chloroplast / ac... 27 9.0
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex... 27 9.0
At1g68460.1 68414.m07821 adenylate isopentenyltransferase 1 / cy... 27 9.0
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 27 9.0
>At1g17745.1 68414.m02196 D-3-phosphoglycerate dehydrogenase /
3-PGDH identical to SP|O04130
Length = 624
Score = 100 bits (239), Expect = 1e-21
Identities = 54/143 (37%), Positives = 80/143 (55%)
Frame = +1
Query: 148 QDLQGRTSYGDTQPRRSGCAFSNSSDQRGVGRRREAKVVGRAGAGVDNIDVDSAGKKGVG 327
+DL+ + + D RSG + + GR KVVGRAG G+DN+D+ +A + G
Sbjct: 114 EDLKKKVAESDALIVRSGTKVTREVFEAAKGR---LKVVGRAGVGIDNVDLQAATEHGCL 170
Query: 328 VINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRALYTGSELAGQDPRHPWPW 507
V+NAP AN ++A E L+ +AR+V A ++KAG+W+R+ Y G L G+
Sbjct: 171 VVNAPTANTVAAAEHGIALLASMARNVAQADASIKAGKWERSKYVGVSLVGKTLAVMGFG 230
Query: 508 RVGREVATRMYAFGMNIIGFDPF 576
+VG EVA R GM +I DP+
Sbjct: 231 KVGTEVARRAKGLGMTVISHDPY 253
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/67 (35%), Positives = 38/67 (56%)
Frame = +2
Query: 71 VLIVDGVGAKCAELLNAYGIATTTKAKISKEELLMEIPNHDALVVRSATQVTKEVLDAGV 250
+L+ + +G LL +G + +S E+L ++ DAL+VRS T+VT+EV +A
Sbjct: 85 ILVTEKLGEAGVNLLREFGDVDCSY-DLSPEDLKKKVAESDALIVRSGTKVTREVFEA-A 142
Query: 251 KRRWSVV 271
K R VV
Sbjct: 143 KGRLKVV 149
>At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase,
putative / 3-PGDH, putative similar to phosphoglycerate
dehydrogenase, Arabidopsis thaliana, SP:O04130
Length = 603
Score = 94.3 bits (224), Expect = 7e-20
Identities = 55/143 (38%), Positives = 75/143 (52%)
Frame = +1
Query: 148 QDLQGRTSYGDTQPRRSGCAFSNSSDQRGVGRRREAKVVGRAGAGVDNIDVDSAGKKGVG 327
++L + S D RSG + GR KVVGRAG G+DN+D+ +A + G
Sbjct: 93 EELNIKISLCDALIVRSGTKVGREVFESSHGR---LKVVGRAGVGIDNVDLSAATEFGCL 149
Query: 328 VINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRALYTGSELAGQDPRHPWPW 507
V+NAP AN ++A E LM +AR+V A ++KAG W R Y G L G+
Sbjct: 150 VVNAPTANTIAAAEHGIALMAAMARNVAQADASVKAGEWKRNKYVGVSLVGKTLAVLGFG 209
Query: 508 RVGREVATRMYAFGMNIIGFDPF 576
+VG EVA R GM +I DP+
Sbjct: 210 KVGTEVARRAKGLGMRVIAHDPY 232
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +2
Query: 152 ISKEELLMEIPNHDALVVRSATQVTKEVLDA 244
++ EEL ++I DAL+VRS T+V +EV ++
Sbjct: 90 MTPEELNIKISLCDALIVRSGTKVGREVFES 120
>At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase,
putative / 3-PGDH, putative similar to SP:O04130 from
[Arabidopsis thaliana]
Length = 588
Score = 92.3 bits (219), Expect = 3e-19
Identities = 46/111 (41%), Positives = 66/111 (59%)
Frame = +1
Query: 244 RREAKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPAST 423
R KVVGRAG G+DN+D+ +A + G V+NAP AN ++A E L+ +AR++ A
Sbjct: 107 RGRLKVVGRAGVGIDNVDLAAATEYGCLVVNAPTANTVAAAEHGIALLTAMARNIAQADA 166
Query: 424 ALKAGRWDRALYTGSELAGQDPRHPWPWRVGREVATRMYAFGMNIIGFDPF 576
++KAG+W R Y G L G+ +VG EVA R GM++I DP+
Sbjct: 167 SIKAGKWTRNKYVGVSLVGKTLAVLGFGKVGSEVARRARGLGMHVITHDPY 217
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/59 (32%), Positives = 34/59 (57%)
Frame = +2
Query: 68 SVLIVDGVGAKCAELLNAYGIATTTKAKISKEELLMEIPNHDALVVRSATQVTKEVLDA 244
++L+ + +G +LL Y + +S EEL +I DAL+VRS T+V ++V ++
Sbjct: 48 TILVTEKLGQAGIDLLKKYANVDCSY-DLSLEELCTKISLCDALIVRSGTKVGRDVFES 105
>At1g68010.1 68414.m07769 glycerate dehydrogenase / NADH-dependent
hydroxypyruvate reductase identical to hydroxypyruvate
reductase (HPR) GB:D85339 [Arabidopsis thaliana] (Plant
Cell Physiol 1997 Apr;38(4):449-55)
Length = 386
Score = 58.4 bits (135), Expect = 4e-09
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Frame = +1
Query: 256 KVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKA 435
K G +N+DV++A K G+ V N PG + EL +L L AR +V A ++
Sbjct: 88 KAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRG 147
Query: 436 G---RWDRALYTGSELAGQDPRHPWPWRVGREVATRMY-AFGMNIIGFDPFR 579
G W L+ G+ L GQ R+G A M F MN+I FD ++
Sbjct: 148 GLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQ 199
>At5g14780.1 68418.m01734 formate dehydrogenase (FDH) identical to
GI:7677266
Length = 384
Score = 55.2 bits (127), Expect = 4e-08
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Frame = +1
Query: 235 VGRRREAKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVP 414
+ + + K++ AG G D+ID+ +A G+ V G+N +S E +L+L R+ VP
Sbjct: 114 IKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVP 173
Query: 415 ASTALKAGRWDRA--LYTGSELAGQDPRHPWPWRVGREVATRMYAFGMNIIGFD 570
+ G W+ A Y +L G+ R+G+ + R+ FG N++ D
Sbjct: 174 GYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHD 227
>At1g72190.1 68414.m08347 oxidoreductase family protein similar to
D-3-phosphoglycerate dehydrogenase from Arabidopsis
thaliana [SP|O04130], glyoxylate reductase from Homo
sapiens (gi:6002730); contains Pfam D-isomer specific
2-hydroxyacid dehydrogenase, NAD binding domain PF02826
Length = 373
Score = 46.4 bits (105), Expect = 2e-05
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 3/127 (2%)
Frame = +1
Query: 205 AFSNSSDQRGVGRRREAKVVGRAGAGVDNIDVDSAGKKGVGVINAPG---ANALSACELT 375
A + D + R K++ + G G+D +D+D+A K G+ V P NA S E+
Sbjct: 100 AMTMQMDSNVISRASNIKLIMQYGVGLDGVDIDAATKHGIKVARIPSEGTGNAASCSEMA 159
Query: 376 CTLMLVLARHVVPASTALKAGRWDRALYTGSELAGQDPRHPWPWRVGREVATRMYAFGMN 555
LML L + +L+ TG L G+ +G E+A R+ FG
Sbjct: 160 IYLMLGLLKKQNEMQISLRNRLLGEP--TGDTLLGKTVFILGYGNIGIELAKRLKPFGSR 217
Query: 556 IIGFDPF 576
+I F
Sbjct: 218 VIATKRF 224
>At1g79870.1 68414.m09330 oxidoreductase family protein contains
Pfam profile: PF02826 D-isomer specific 2-hydroxyacid
dehydrogenase, NAD binding domain; similar to glyoxylate
reductase from Thermococcus litoralis [gi:13515409]
Length = 313
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Frame = +1
Query: 211 SNSSDQRGVGRRREAKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLML 390
S +D + + ++V G+D ID+ +KG+ V N P +L L+L
Sbjct: 54 SAGADAQLISDLPNLEIVSSFSVGLDKIDLGKCKEKGIRVTNTPDVLTEDVADLAIGLIL 113
Query: 391 VLARHVVPASTALKAGRWDRALY-TGSELAGQDPRHPWPWRVGREVATRMYAFGMNI 558
L R + +++G+W + + ++ +G+ R+G +A R AF I
Sbjct: 114 ALLRRLCECDRYVRSGKWKQGEFQLTTKFSGKSVGIIGLGRIGTAIAKRAEAFSCPI 170
>At2g45630.2 68415.m05674 oxidoreductase family protein low
similarity to SP|P36234 Glycerate dehydrogenase (EC
1.1.1.29) (NADH-dependent hydroxypyruvate reductase)
{Hyphomicrobium methylovorum}; contains Pfam profile
PF00389: D-isomer specific 2-hydroxyacid dehydrogenase,
catalytic domain
Length = 338
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Frame = +1
Query: 256 KVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKA 435
++V AGVD++D+ ++G+ V NA + + + L++ + R + A+ +K
Sbjct: 92 RLVVTTSAGVDHVDLVECRRRGISVANAGSSFSEDVADTAVGLLIDVFRRISAANRFVKQ 151
Query: 436 GRWD-RALYT-GSELAGQDPRHPWPWRVGREVATRMYAFGMNI 558
W + Y GS+L + +G +VATR+ AFG I
Sbjct: 152 RFWPLKGDYPLGSKLGRKRIGIVGLGSIGSKVATRLDAFGCQI 194
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -2
Query: 356 SALAPGALITPTPFLPAESTSMLSTPAPARPT 261
S +P TPTP P ST STP P+ PT
Sbjct: 271 SGASPSGSPTPTPSTPTPSTPTPSTPTPSTPT 302
Score = 31.5 bits (68), Expect = 0.56
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = -2
Query: 428 SAVEAGTTWRARTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPT 261
S +G T++ T + S P TPTP P ST STP P+ PT
Sbjct: 255 SGGSSGNTYKDTTGSSSGASPSGSPTPTPS---TPTPSTPTPSTPTPSTPTPSTPT 307
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -2
Query: 329 TPTPFLPAESTSMLSTPAPARP 264
TPTP P ST STPAP+ P
Sbjct: 295 TPTPSTPTPSTPTPSTPAPSTP 316
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 329 TPTPFLPAESTSMLSTPAPARP 264
TPTP P ST STP P+ P
Sbjct: 290 TPTPSTPTPSTPTPSTPTPSTP 311
>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
protein ESTs gb|F20110 and gb|F20109 come from this gene;
contains Pfam profile PF00515: TPR Domain
Length = 1558
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 70 GFDRRRGWRQVCRTPQR-LRNRHHHQGQDLQGRTSYGDTQPRRSGCAFSNSSDQRGV 237
G R+ RQ +R L N+HH++ QD+Q + Y Q G + S SS +R +
Sbjct: 1165 GAGRKSRQRQPDLMKKRMLLNKHHNRNQDVQQQNIYSPLQKTSKGPSLSKSSPRRAL 1221
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 30.7 bits (66), Expect = 0.97
Identities = 22/75 (29%), Positives = 30/75 (40%)
Frame = +1
Query: 52 GRGH*VGFDRRRGWRQVCRTPQRLRNRHHHQGQDLQGRTSYGDTQPRRSGCAFSNSSDQR 231
GRGH G G R+ R + R+R HH+G + + R G +
Sbjct: 95 GRGH--GHGHGHGHRRHGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGHGHGRGRGGHVQ 152
Query: 232 GVGRRREAKVVGRAG 276
G R E +V GR G
Sbjct: 153 EAGERWEQEVGGRGG 167
>At4g31650.1 68417.m04495 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 from
[Brassica oleracea var. botrytis] GI:3170424,
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 493
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 245 GVKRRWSVVLELVWTTSTSTPPVKRASE*ST 337
GVK SVVLELVW +T+ P K S+ T
Sbjct: 463 GVKAYESVVLELVWEETTTLPMFKFCSKIKT 493
>At1g65960.1 68414.m07484 glutamate decarboxylase 2 (GAD 2) similar
to glutamate decarboxylase (gad) GI:294111 from [Petunia
hybrida]
Length = 494
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +2
Query: 47 KMVVDIKSVLI-VDGVGAKCAELLNAYGIATTTKAKISKEELLMEI 181
++V DI VL +D + +K ++ + GIA K K ++E+LME+
Sbjct: 431 RLVADISKVLHELDTLPSKISKKMGIEGIAENVKEKKMEKEILMEV 476
>At1g12020.1 68414.m01388 expressed protein
Length = 226
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -2
Query: 608 NGTGRTDQQTRKGSNPMMFMPKAYILVATSRPTRQGQGWRGSCPASS 468
N TG+ D++ R G + + ++ + P+R G+ SCP +S
Sbjct: 127 NVTGKKDRRKRSGKSSSLLASSSFSTDDSEIPSRLGESVVNSCPCTS 173
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = -2
Query: 485 SCPASSLPVYRARSHLPAFSAVEAGTTWRARTNINVQVSSHALSALAPGALITPTPFLPA 306
S P SS ++ A P+FS + + + +I S + A TP+ F +
Sbjct: 239 SAPGSSSSIFGATGSSPSFSVASSASG--SSPSIFGATGSSPFFGSSSSAGSTPSLFASS 296
Query: 305 ESTSMLSTPAPARPTTFAS 249
S + S+P+P +TF S
Sbjct: 297 SSGATTSSPSPFGVSTFNS 315
>At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 177
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 326 PTPFLPAESTSMLSTPAPARPTTFASRLRPTPL 228
P+P +P+ S S P P+ PT PTP+
Sbjct: 50 PSPSIPSPSVPTPSVPTPSVPTPSVPSPNPTPV 82
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Frame = +1
Query: 145 GQDLQGRTSYGD-TQPRRSGCAFSNSSDQ---RGVGRRREAKVVGRAG 276
G DL GRT D QP + G N D+ RG R R GR G
Sbjct: 70 GMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGG 117
>At2g32235.1 68415.m03939 expressed protein
Length = 310
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -1
Query: 561 DDVHAEGVHPSGHLAADPPRPRMARVLPSELAASVQS 451
+ V E PSG++ + PPRPRM R S+L+ + S
Sbjct: 155 NSVAQETSPPSGNVPSLPPRPRMFRRSVSDLSPAPSS 191
>At1g49870.1 68414.m05591 expressed protein ; expression supported
by MPSS
Length = 828
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +2
Query: 53 VVDIKSVLI---VDGVGAKCAELLNAYGIATTTKAKISKEELLMEIPNHDALVVRSATQV 223
+ D++S+L+ V G+ + E + G K +++ L E+P+ D+ +V+ +++
Sbjct: 480 IPDLESLLVKKHVSGLEKEVQETIKNCGKMYENVKKPGRKDGLSEVPSLDSCLVKHFSKL 539
Query: 224 TKEVLDA 244
KEV +A
Sbjct: 540 EKEVQEA 546
>At1g24610.1 68414.m03096 SET domain-containing protein low
similarity to SP|Q43088 Ribulose-1,5 bisphosphate
carboxylase/oxygenase large subunit N-
methyltransferase, chloroplast precursor (EC 2.1.1.127)
{Pisum sativum}; contains Pfam profile PF00856: SET
domain
Length = 476
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 561 RIRPFSCLLISAPSSIAP 614
+IRPF+CL S PS +AP
Sbjct: 14 QIRPFTCLAASLPSRLAP 31
>At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 182
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 326 PTPFLPAESTSMLSTPAPARPTTFASRLRPTPL 228
P+P++P S S P P+ P+ PTP+
Sbjct: 55 PSPYVPTPSVPSPSVPTPSVPSPSVPSPNPTPV 87
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 27.9 bits (59), Expect = 6.8
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = -1
Query: 534 PSGHLAA---DPPRPRMARVLPSELAASVQSPVPPASLQRSGSWDHVASQNQHQRAGQLA 364
P LA+ D PR M+ P ++ A SP+P ++ SGS +S R+ QLA
Sbjct: 215 PDARLASPWLDTPRSTMSSASPWDMGAP--SPIP---IRASGSSIRSSSSRYGGRSNQLA 269
Query: 363 RAQRIGARSVDHSD 322
++ + HSD
Sbjct: 270 YSREGDLTNEGHSD 283
>At5g10690.1 68418.m01237 pentatricopeptide (PPR) repeat-containing
protein / CBS domain-containing protein contains CBS and
PPR domain repeats
Length = 580
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -2
Query: 347 APGALITPTPFLPAESTSMLSTPAPARPTTFASRLRPTPLWSLELLNAQPERRGWV 180
A L+TP P LP+ S P R T ++ R+ PL S +L + + G +
Sbjct: 6 AISTLVTPLPLLPSCSFVPTRRCYPRRATPYSRRINLKPLTSRIVLLTRRRQLGQI 61
>At4g35240.1 68417.m05009 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 828
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +3
Query: 372 DLHVDVGSGSPRGPSFHCAEGWQVGPGSVHWQRARWARPSPSLALAGRPRGGH*DV 539
D H +V P F G Q P +VH R PSP L +G G DV
Sbjct: 313 DSHYEVVKEVYGKPKFAAGGGHQPNPAAVHMMREE--SPSPPLDKSGASTSGGGDV 366
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -1
Query: 555 VHAEGVHPSGHLAADPPRPRMARVLPSELAASVQSPVPP 439
VH P H + PP P LP + S SP PP
Sbjct: 719 VHHSPPPPVIHQSPPPPSPEYEGPLPPVIGVSYASPPPP 757
>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
eukaryotic translation initiation factor 3 subunit 10
(eIF-3 theta) (Eukaryotic translation initiation factor 3
large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
SWISS-PROT:Q9LD55
Length = 987
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 448 GPTCQPSAQWKLGPRGEPEPTSTCRSARTR 359
GP + +W GPRG + ST S+R R
Sbjct: 954 GPPAEGGDRWGSGPRGSDDRRSTFGSSRPR 983
>At3g63180.1 68416.m07097 expressed protein
Length = 978
Score = 27.9 bits (59), Expect = 6.8
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -1
Query: 567 ESDDVHAEGVHPSGHLAADPPRPRMARVLPSELAASVQSPVPPASLQRSGSWDHVASQN- 391
+S H + P G + A P +P+ S AS+ S PPA+L S + H+++
Sbjct: 690 DSRGSHTQKGGPFGQIMAAPVQPQNF----SMSFASIASSAPPATLNFSSNGYHISTPPG 745
Query: 390 -QHQRAGQLARAQRIG 346
HQ+ Q + A+ G
Sbjct: 746 VAHQKNHQSSEAKTGG 761
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 344 PGALITPTPFLPAESTSMLSTPAPARPTTFAS-RLRPTP 231
PG+L TP LP S S TP+P PTT ++ R P+P
Sbjct: 70 PGSL---TPPLPQPSPSAPITPSPPSPTTPSNPRSPPSP 105
>At4g13600.1 68417.m02117 glycosyl hydrolase family protein 17
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 183
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 431 RLAGGTGLCTLAASS-LGKTLAILGLGGSAARWPLGCTPS 547
R A G C A +S + KT + GGSA+ +G TPS
Sbjct: 78 RAAMAPGSCNFAGTSTIAKTDPSINAGGSASTTTVGGTPS 117
>At3g48560.1 68416.m05302 acetolactate synthase, chloroplast /
acetohydroxy-acid synthase (ALS) nearly identical to
SP|P17597 Acetolactate synthase, chloroplast precursor
(EC 2.2.1.6, formerly EC 4.1.3.18) (Acetohydroxy-acid
synthase) (ALS) {Arabidopsis thaliana}
Length = 670
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = -2
Query: 302 STSMLSTPAPARPT---TFASRLRP-TPLWSLELLNAQPERRG 186
+T++ +TP+P +PT TF SR P P ++L ER+G
Sbjct: 69 TTNVTTTPSPTKPTKPETFISRFAPDQPRKGADILVEALERQG 111
>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 494
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -1
Query: 534 PSGHLAADPPRPRMARVLPSELAASVQSPVPP 439
P H + PP P LP + S SP PP
Sbjct: 460 PVHHSSPPPPSPEFEGPLPPVIGVSYASPPPP 491
>At1g68460.1 68414.m07821 adenylate isopentenyltransferase 1 /
cytokinin synthase (IPT1) identical to adenylate
isopentenyltransferase (IPT1) [Arabidopsis thaliana]
GI:14279054
Length = 357
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +1
Query: 241 RRREAKVV---GRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVV 411
R R+ KVV G GAG + VD A + +IN+ E+T + + R V
Sbjct: 61 RNRKDKVVVILGATGAGKSRLSVDLATRFPSEIINSDKIQVYEGLEITTNQITLQDRRGV 120
Query: 412 P 414
P
Sbjct: 121 P 121
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 27.5 bits (58), Expect = 9.0
Identities = 35/130 (26%), Positives = 51/130 (39%), Gaps = 13/130 (10%)
Frame = -2
Query: 524 TSRPTRQGQGWRGSCP-ASSLPV----YRARSHLPAFSAVEAGTTWRARTNINVQVSSHA 360
+S P GQ G+ P +SS P+ Y A + + SA T +N S+
Sbjct: 279 SSTPPPPGQYMAGNAPFSSSTPLPPGQYPAVNAQLSTSAPSVPLPPGQYTAVNAPFSTST 338
Query: 359 LS-ALAPG-------ALITPTPFLPAESTSMLSTPAPARPTTFASRLRPTPLWSLELLNA 204
+L PG AL TP P + T+ + PAP P S P P +
Sbjct: 339 QPVSLPPGQYMPGNAALSASTPLTPGQFTTANAPPAPPGPANQTSPPPPPPPSAAAPPPP 398
Query: 203 QPERRGWVSP 174
P ++G +P
Sbjct: 399 PPPKKGPAAP 408
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,156,637
Number of Sequences: 28952
Number of extensions: 357559
Number of successful extensions: 1392
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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