Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0360
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    60   4e-10
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac...    41   2e-04
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    38   0.001
SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa...    36   0.007
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    28   1.5  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    27   2.0  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    27   2.0  
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    27   3.4  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   4.5  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   6.0  

>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 24/55 (43%), Positives = 37/55 (67%)
 Frame = +1

Query: 502 IKTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYSQEVF 666
           I  +KH+QEY   R+RIHR+  ESTN RV  WSI +  +L+ + + Q++Y + +F
Sbjct: 139 ISKVKHEQEYFVARERIHRNTAESTNDRVKWWSILQTVILVSVCVFQIFYLKRLF 193



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +2

Query: 263 ILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNL 412
           I  P G ++H+    S   Y+F+    GKY YCF N       K V+FN+
Sbjct: 62  IYNPAGQIMHQEVPNSMAQYSFTVKNPGKYMYCFYNDALDGESKEVLFNV 111



 Score = 34.3 bits (75), Expect = 0.017
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +3

Query: 126 VSNAYSYTVTVDAHAEECFYENVEADTKLGLSFEIAEGG 242
           +S  + + +T+  H  ECFYEN+  + ++ ++++   GG
Sbjct: 16  ISVVFGHGITLKPHQRECFYENLRNNDQMSVTYQTNVGG 54


>SPBC16E9.09c |||COPII vesicle coat component
           Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 21/55 (38%), Positives = 32/55 (58%)
 Frame = +1

Query: 502 IKTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYSQEVF 666
           +++I  +Q   + R+   R  +ES NSRVV W+I +  VLLV  I Q+ + Q  F
Sbjct: 155 LESILGEQMLQRSREMTFRDTSESANSRVVRWTIVQIVVLLVTCIWQLSHLQRFF 209


>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = +1

Query: 499 YIKTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYSQEVF 666
           +I+ IK    Y+Q R+   R+ NESTN RV  ++      L V+ I Q+ Y +  F
Sbjct: 154 FIEEIKGKIYYLQAREARFRNTNESTNERVKNFAYLTFISLFVLVIWQILYLRSFF 209


>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
 Frame = +2

Query: 260 IILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEI-GEPQTK 436
           +I  P    +   ++       F+    G+Y +CF N MS+ T K+V   + +  E    
Sbjct: 63  MIKAPSQKTVALGKKRRQADVFFTLEEKGEYEFCFDNHMSTFTDKIVTMEITMENELSLP 122

Query: 437 SGNENEADHNKLEDMIKELATTLRLSNTIKSICR 538
           +   +EA   K + M    +T L +S  +  I R
Sbjct: 123 ALTRDEAKDYKKDSM---QSTVLEISTALSEIDR 153



 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/55 (23%), Positives = 30/55 (54%)
 Frame = +1

Query: 502 IKTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYSQEVF 666
           +  I   Q Y + R+  + S  +ST +R+  +S+ E+ +++ ++  QV+  +  F
Sbjct: 148 LSEIDRVQNYFKTREHRNYSTVKSTQARIFWFSLAESIMVVALSALQVFIVKTFF 202


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -1

Query: 638 PIVMTSSTEASNID---HITTREFVLSFIERWIRSRTCIYS*SCLIVL 504
           P  +T + EA  ID    +   E V+ F+E    SR C+Y  SC+ +L
Sbjct: 195 PFFLTHNAEADAIDLLQELGAIEKVVPFVELDNASRVCLYITSCVNLL 242


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = +2

Query: 350 YTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNEN----EADHNKLEDMIKELATTLRLSN 517
           Y     ++  SM P+ ++   ++ E +  S +EN    EAD+N  +D+I +LAT   L  
Sbjct: 352 YDVPLPSRSHSMNPRELVA-AKLKEIKENSFSENQQSDEADYNVTDDLILQLATQQSLEE 410

Query: 518 TIKS 529
             KS
Sbjct: 411 NKKS 414


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
 Frame = -2

Query: 292 MNDVAIRA*YYYIIS-KKPPSAISNDNPNLVSASTFS*KHSSACASTVTV*LYALLTRFN 116
           ++ +A +  +YYI+  +K   ++   N  L    T S +H S   + V   L     +FN
Sbjct: 165 LDQIAAKLYFYYILFFEKCNRSVECRNTLLSVHRTASLRHDSETQAMVLTLLLRNYIQFN 224

Query: 115 KVTTSHCDILKYFILINVNNH--IQFLFYFGLLR 20
               +   + K   L N +N+  I++ +Y G +R
Sbjct: 225 LYDQADRLVSKTSFLTNASNNLAIRYQYYLGRIR 258


>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 273 LMATSFIKQRGSHLVFIHFLLQLQGSILIASVIKCHP 383
           +M T  +K  G   + +HF+  + G+ L  ++ KC P
Sbjct: 170 VMVTEALKPYGQENLELHFVSNIDGTHLAEALKKCDP 206


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -2

Query: 238 PSAISNDNPNLVSASTFS*KHSSACASTVTV*LYALL 128
           PSA+SN  P ++SAST S   SS  A  +   L+A L
Sbjct: 582 PSAVSNYAPTVLSASTTS-GTSSVRAKPIVFYLFASL 617


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 139  YALLTRFNKVTTSHCDILKYFILINV 62
            YA+L   N +T++ CD   Y +L+ V
Sbjct: 1026 YAILNILNLLTSNECDEFDYSVLMKV 1051


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,996
Number of Sequences: 5004
Number of extensions: 61010
Number of successful extensions: 162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)