Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0360
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1098 - 30395704-30395837,30396644-30396751,30396933-303971... 40 0.003
07_03_1385 + 26189034-26189294,26189427-26189636,26191016-261910... 38 0.010
09_04_0359 + 16941904-16942110,16943636-16943785,16944084-169442... 36 0.024
03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312 34 0.095
06_01_0751 + 5630036-5630233,5630623-5630718,5631420-5631629,563... 33 0.22
02_05_0873 - 32372143-32372287,32372678-32372754,32372863-323730... 32 0.51
09_04_0676 - 19383757-19383890,19384308-19384415,19384493-193846... 31 0.67
08_02_0963 + 23068851-23069042,23069262-23069414,23069590-230696... 31 1.2
08_02_1381 - 26551920-26552053,26552963-26553070,26553154-265533... 29 3.6
07_03_0647 - 20253380-20253505,20253718-20253727,20253864-202539... 28 6.2
07_03_0642 - 20216944-20217069,20217282-20217291,20217428-202175... 28 6.2
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502... 28 8.3
>03_05_1098 -
30395704-30395837,30396644-30396751,30396933-30397119,
30398127-30398330
Length = 210
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/81 (24%), Positives = 35/81 (43%)
Frame = +2
Query: 263 ILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSG 442
+ P GN ++ + +S + F AP G Y +CF N + P+ V F + +G +
Sbjct: 69 VTSPGGNTVYTLKGKSGDKFEFKAPRGGMYKFCFHNPYGA--PETVSFYIHVGHIPNEHN 126
Query: 443 NENEADHNKLEDMIKELATTL 505
+ + + I EL L
Sbjct: 127 LAKDEHLDPINVKIAELKEAL 147
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/55 (30%), Positives = 33/55 (60%)
Frame = +1
Query: 502 IKTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYSQEVF 666
++++ +Q+Y++ R+ HR NEST RV+ ++I E + + QV Y + +F
Sbjct: 147 LESVTAEQKYLKAREARHRHTNESTRRRVMFYTIAEYLAFMGASALQVVYIRRLF 201
>07_03_1385 +
26189034-26189294,26189427-26189636,26191016-26191092,
26191196-26191340
Length = 230
Score = 37.5 bits (83), Expect = 0.010
Identities = 28/90 (31%), Positives = 38/90 (42%)
Frame = +2
Query: 263 ILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSG 442
+ P GN +H AE SG + F+A AG Y CF P + F +
Sbjct: 88 VTSPYGNSVHYAENVPSGNFAFTATEAGDYLACFW-APDHKPPVSIGFEFDWRSGVAAKD 146
Query: 443 NENEADHNKLEDMIKELATTLRLSNTIKSI 532
N A +++ M EL +L TIKSI
Sbjct: 147 WSNVAKKGQVDVMEMELK---KLEETIKSI 173
>09_04_0359 +
16941904-16942110,16943636-16943785,16944084-16944293,
16944376-16944452,16944554-16944698
Length = 262
Score = 36.3 bits (80), Expect = 0.024
Identities = 24/90 (26%), Positives = 45/90 (50%)
Frame = +2
Query: 263 ILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSG 442
+ P G+++H ++ S+G ++F+ AG Y CFS + VV NL+
Sbjct: 120 VTSPFGDIVHHKQKVSTGQFSFTTAEAGNYLACFSADGRNKR-LVVKLNLDWRVGIATKD 178
Query: 443 NENEADHNKLEDMIKELATTLRLSNTIKSI 532
++ A KLE + EL ++L ++++I
Sbjct: 179 WDSVAKKEKLEGVELEL---VKLETSVQAI 205
>03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312
Length = 232
Score = 34.3 bits (75), Expect = 0.095
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 263 ILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCF 364
+ P GN +H +E SG + F+A AG Y CF
Sbjct: 90 VTSPYGNSLHYSENVQSGNFAFTASEAGDYLACF 123
>06_01_0751 +
5630036-5630233,5630623-5630718,5631420-5631629,
5631735-5631811,5632204-5632222,5632304-5632348
Length = 214
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 263 ILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCF 364
+ P GN +H E ++G + F+ AG Y CF
Sbjct: 99 VTSPYGNTVHHNENATTGQFAFTTSEAGNYLACF 132
>02_05_0873 -
32372143-32372287,32372678-32372754,32372863-32373072,
32374645-32374869
Length = 218
Score = 31.9 bits (69), Expect = 0.51
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 257 VIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCF 364
V + P GN +H E + G + F+ AG Y CF
Sbjct: 74 VKVTSPYGNTLHHNENATVGQFAFTTSEAGNYLACF 109
>09_04_0676 -
19383757-19383890,19384308-19384415,19384493-19384679,
19384937-19385143
Length = 211
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 257 VIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNK 373
+++ P+GN IH + + S + F G + +CF+NK
Sbjct: 68 LVVRDPNGNQIHDSRDKISDKFEFIVHRRGVHRFCFTNK 106
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/52 (25%), Positives = 29/52 (55%)
Frame = +1
Query: 511 IKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYSQEVF 666
I+ +Q +++ + +NE+ + R V + FE++ L+ ++ QVY +F
Sbjct: 151 IQFEQHWLEAQTDRQAILNENMSRRAVHKAFFESAALIAASVVQVYLLHRLF 202
>08_02_0963 +
23068851-23069042,23069262-23069414,23069590-23069666,
23069744-23069762,23070182-23070202
Length = 153
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 263 ILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFS 367
+ P G V+H E+ G ++F+ G Y CFS
Sbjct: 73 VTSPYGKVLHHREKVMQGQFSFNTAEPGVYLACFS 107
>08_02_1381 -
26551920-26552053,26552963-26553070,26553154-26553340,
26554107-26554316
Length = 212
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/52 (23%), Positives = 30/52 (57%)
Frame = +1
Query: 511 IKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYSQEVF 666
I+ +Q +++ + +NE+ + R V ++ E++ L+ ++ QVY + +F
Sbjct: 152 IQFEQHWLEAQTDRQAILNENMSRRAVHKALLESAALIAASVIQVYLLRRLF 203
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +2
Query: 257 VIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIG 421
+++ P+G + + ++S + F G + +CF+NK S + V F++ +G
Sbjct: 69 LVVKDPNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNK--SPYHETVDFDVHVG 121
>07_03_0647 -
20253380-20253505,20253718-20253727,20253864-20253977,
20254063-20254382
Length = 189
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 344 GKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENE 454
GK S ++S+TP+V + + G+PQ K GN +
Sbjct: 34 GKVKRSDSVPVASITPRVALQTVNGGKPQRKHGNRQQ 70
>07_03_0642 -
20216944-20217069,20217282-20217291,20217428-20217541,
20217627-20217946
Length = 189
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 344 GKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENE 454
GK S ++S+TP+V + + G+PQ K GN +
Sbjct: 34 GKVKRSDSVPVASITPRVALQTVNGGKPQRKHGNRQQ 70
>07_03_1575 - 27848977-27849095,27849254-27849302,27850270-27850287,
27850798-27851786,27852119-27852733,27852893-27852921,
27853990-27854453,27854530-27854654,27854743-27855025,
27855112-27856102,27856965-27857576,27857666-27858630
Length = 1752
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Frame = +2
Query: 398 VMFNLEIGEPQTKSGNENE-ADHNKLE------DMIKELATTLRLSNTIKSIC 535
V+FNL + + E E DHNK+E +M L T L +T +SIC
Sbjct: 1497 VLFNLNSTKELDSTSTEKELGDHNKIEEFDVNMEMFFNLNNTKELDSTGESIC 1549
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,723,818
Number of Sequences: 37544
Number of extensions: 345731
Number of successful extensions: 675
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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