Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0360
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53257| Best HMM Match : No HMM Matches (HMM E-Value=.)              99   2e-21
SB_55278| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_4813| Best HMM Match : EMP24_GP25L (HMM E-Value=3.9e-13)            37   0.014
SB_11345| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_3525| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  

>SB_53257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score =   99 bits (238), Expect = 2e-21
 Identities = 60/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
 Frame = +2

Query: 209 IGIIV*NSRRWFLRYYVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMT 388
           +G+I   +   FL   V I+GPD  VI+  ERE+SG YTF+A   G Y YCFSNKMS+MT
Sbjct: 1   MGLIFEVAEGGFLDIDVKIIGPDQKVIYSGERETSGKYTFAAHMDGTYNYCFSNKMSTMT 60

Query: 389 PKVVMFNLEIGEPQTKSGNENEADHNKLEDMIKELA---TTLRLSNTIKSICRCVIVSIV 559
           PKV+ F+++IGE    +  E+ A H+KL +M+ +L+   T ++       +   +  SI 
Sbjct: 61  PKVLKFSMDIGEAPKDTSKEDNAGHDKLSEMVSQLSEAMTGVKHEQEYMEVRERIHRSIN 120

Query: 560 Q*MKVQIHVW*CGLYLRLQYCLS*LSDKSTILKRFFEVQRVV 685
                ++  W    +      ++    +   LKRFFEV+RVV
Sbjct: 121 DNTNSRVVWW---SFFESLVLVAMTLGQVYYLKRFFEVRRVV 159



 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 35/52 (67%), Positives = 45/52 (86%)
 Frame = +1

Query: 511 IKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYSQEVF 666
           +KH+QEYM+VR+RIHRSIN++TNSRVV WS FE+ VL+ MT+GQVYY +  F
Sbjct: 102 VKHEQEYMEVRERIHRSINDNTNSRVVWWSFFESLVLVAMTLGQVYYLKRFF 153


>SB_55278| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
 Frame = +2

Query: 257 VIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQ-- 430
           VI+   +   ++  +++    +TF+    G Y +CFSN+ S+++ K V F+ + GE    
Sbjct: 64  VILYDINEKELYSVQKKQYDSHTFTVEQPGIYKFCFSNEFSTISHKTVYFDFQSGEETQL 123

Query: 431 TKS-GNENEA 457
           TK+ GN + A
Sbjct: 124 TKTMGNHHTA 133



 Score = 36.3 bits (80), Expect = 0.024
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +3

Query: 105 VVTLLNLVSNAYSYTVTVDAHAEECFYENVEADTKLGLSFEIAEGGFLDI 254
           V+ L  ++ +    T  ++ +A +CFYE ++ D K  L F++  GG  D+
Sbjct: 13  VLALSCILVSCTELTFELEDNARQCFYEELKKDAKATLEFQVITGGNYDV 62


>SB_4813| Best HMM Match : EMP24_GP25L (HMM E-Value=3.9e-13)
          Length = 348

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +1

Query: 502 IKTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYSQEVF 666
           ++ I  +Q Y + R+   R  +ESTN RV+ W++ +  +LL     Q+ + +  F
Sbjct: 288 VEQISKEQNYQRFREERFRMTSESTNQRVLWWALAQTVILLATGFWQMRHLKGFF 342



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 254 YVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYC 361
           +V +  P+G +I      S G +TF++ T G++  C
Sbjct: 199 HVEVKDPNGKIIMSKYYSSEGRFTFTSHTPGEHVIC 234


>SB_11345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 243

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/78 (20%), Positives = 29/78 (37%)
 Frame = +2

Query: 272 PDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNEN 451
           P G +  +    +   ++      G+Y +CF N  S++  K +  +L +           
Sbjct: 98  PSGKIAIEDGHRTDEAHSLVTEEEGEYEFCFDNTFSTVASKAIFADLGVDFEDDIQKMIG 157

Query: 452 EADHNKLEDMIKELATTL 505
             D N  ED+      TL
Sbjct: 158 IKDENLEEDLHDRFVRTL 175


>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2499

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/60 (28%), Positives = 33/60 (55%)
 Frame = +2

Query: 338  TAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENEADHNKLEDMIKELATTLRLSN 517
            T+ KY+   S  +    PK ++  LE+     ++GN++    ++ +D I ++  +LRLSN
Sbjct: 1242 TSKKYSKIGSGVVYYNDPKDLLSRLELLGGSIQAGNDSVKGVSRPDDFIIKMNLSLRLSN 1301


>SB_3525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 245 ETTFCYFKR*SQFGIGFYIFVKALFGMCINCDC 147
           E  +C+FKR   +G    I  K   G+C+NC C
Sbjct: 15  EEMWCFFKR---YGRYIVISSKMCTGICLNCIC 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,365,738
Number of Sequences: 59808
Number of extensions: 431684
Number of successful extensions: 998
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)