Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0360
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF014940-5|AAB63937.1|  203|Caenorhabditis elegans Suppressor/en...    98   5e-21
AF039713-7|AAB96722.1|  203|Caenorhabditis elegans Hypothetical ...    42   3e-04
Z74035-1|CAA98480.1|  204|Caenorhabditis elegans Hypothetical pr...    40   0.001
AL117207-7|CAB60397.1|  211|Caenorhabditis elegans Hypothetical ...    38   0.005
Z68316-4|CAA92683.1|  234|Caenorhabditis elegans Hypothetical pr...    31   0.60 
AF100673-4|AAP13734.2|  438|Caenorhabditis elegans Hypothetical ...    30   1.8  
AL021346-2|CAB63233.1|  419|Caenorhabditis elegans Hypothetical ...    28   7.4  

>AF014940-5|AAB63937.1|  203|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein9 protein.
          Length = 203

 Score = 98.3 bits (234), Expect = 5e-21
 Identities = 49/92 (53%), Positives = 64/92 (69%), Gaps = 4/92 (4%)
 Frame = +2

Query: 242 FLRYYVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIG 421
           FL   V I GPD   I+K ERESSG +TF+A   G YTYCF NKMS+MTPK VMF +EI 
Sbjct: 52  FLDIDVKITGPDNKEIYKGERESSGKFTFAAHMDGVYTYCFGNKMSTMTPKAVMFTVEIT 111

Query: 422 EPQTK----SGNENEADHNKLEDMIKELATTL 505
           EP  +    + N++ AD+ KLE+M++EL++ L
Sbjct: 112 EPHQQAPGAAANQDAADNAKLEEMVRELSSAL 143



 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 33/55 (60%), Positives = 48/55 (87%)
 Frame = +1

Query: 502 IKTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYSQEVF 666
           + ++KH+QEYM+VR+R+HR+INE+TNSRVVMW+ FEA VL+ MT+GQ++Y +  F
Sbjct: 143 LMSVKHEQEYMEVRERVHRNINENTNSRVVMWAAFEAFVLVGMTVGQIFYLKRFF 197



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 26/52 (50%), Positives = 38/52 (73%)
 Frame = +3

Query: 99  WLVVTLLNLVSNAYSYTVTVDAHAEECFYENVEADTKLGLSFEIAEGGFLDI 254
           W++  L   V+ A SY + VDA+ E+CF++ + + TK+GL FE+AEGGFLDI
Sbjct: 6   WILAVLF--VTPAASYFIHVDANEEQCFFDRLTSGTKMGLMFEVAEGGFLDI 55


>AF039713-7|AAB96722.1|  203|Caenorhabditis elegans Hypothetical
           protein F57B10.5 protein.
          Length = 203

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = +2

Query: 257 VIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTK 436
           +II  P+G V++K  ++      F A   G Y  CFSN+ S+ + K+V  + + G+    
Sbjct: 58  LIIEDPNGKVLYKDTKKQYDSINFKAEVEGTYKACFSNEFSTFSHKIVYMDWQFGDQNAL 117

Query: 437 SGNENEADH--NKLEDMIKELATTLR 508
                +  H   +LE+    +   LR
Sbjct: 118 HAAVTQGAHAMTQLENYAVAIGDKLR 143



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 17/55 (30%), Positives = 34/55 (61%)
 Frame = +1

Query: 502 IKTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYSQEVF 666
           ++TI   Q + ++R+   R   E  N RV++WS+ +++V++ + IGQV+  +  F
Sbjct: 142 LRTIDDYQTHHRLREATGRKRAEELNERVMIWSLGQSAVVVFIGIGQVFLLKSFF 196



 Score = 32.7 bits (71), Expect = 0.26
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +3

Query: 102 LVVTLLNLVSNAYSYTVTVDAHAEECFYENVEADTKLGLSFEIAEGGFLDI 254
           +V ++L  +  +   T  +  +A +CFYE+++ D      F++  GG  D+
Sbjct: 6   IVSSILVALGLSIELTFELPDNANQCFYEDLKKDVDTVFEFQVVTGGHYDV 56


>Z74035-1|CAA98480.1|  204|Caenorhabditis elegans Hypothetical
           protein F47G9.1 protein.
          Length = 204

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 22/53 (41%), Positives = 31/53 (58%)
 Frame = +1

Query: 508 TIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYSQEVF 666
           +I  D  +M+ R+   R+ NESTNSRV+  SIF    LL + I QV + +  F
Sbjct: 145 SITKDFAFMRQREEEMRNTNESTNSRVLYLSIFSMLCLLGLAIWQVLFLRNYF 197


>AL117207-7|CAB60397.1|  211|Caenorhabditis elegans Hypothetical
           protein Y60A3A.9 protein.
          Length = 211

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +1

Query: 502 IKTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYSQEVF 666
           +  I  +Q Y + R+   R  +ESTNSRV  WSI +  VL +    Q+ + +  F
Sbjct: 151 VDQITKEQNYQRYREERFRQTSESTNSRVFYWSIAQVVVLAITGAWQMRHLRGFF 205


>Z68316-4|CAA92683.1|  234|Caenorhabditis elegans Hypothetical
           protein K08E4.6 protein.
          Length = 234

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +2

Query: 281 NVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENEAD 460
           N++ + + +  G +       G Y  CF N  S  + KVV F + + +     GN +EAD
Sbjct: 72  NILKQDQLKVDGSHRIELNQPGDYQVCFDNSFSYQSRKVVFFEIFLFDAH---GNLDEAD 128



 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +3

Query: 123 LVSNAYSYTVTVDAHAEECFYENVE-ADTK-LGLSFEIAEGGFLDI 254
           ++   Y +TV V A   +CF++ V+ A  K L + +++ +GG L+I
Sbjct: 18  ILCGEYDFTVEVPAGKFQCFFQPVDLAKHKTLEVDYQVIDGGDLNI 63


>AF100673-4|AAP13734.2|  438|Caenorhabditis elegans Hypothetical
           protein Y66H1B.5 protein.
          Length = 438

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +2

Query: 263 ILGPDGN--VIHKAERESSGIYTFSAPT--AGKYTYCFSNKMSSMTPKVVMFNLEIGEPQ 430
           + GPDG   + H    E +GIY  S PT  AG+Y   F      +  +V +   +IG  +
Sbjct: 284 VFGPDGKERLNHVRSTEQNGIYDVSFPTDMAGEYCVVFYINGQEVAARVPVMAEKIGRKE 343


>AL021346-2|CAB63233.1|  419|Caenorhabditis elegans Hypothetical
           protein H37A05.2 protein.
          Length = 419

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 350 YTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENEADHNKLEDMIKELAT 499
           Y  CF   +  M P ++ F++++GE      N NE    K+  +I++L T
Sbjct: 360 YELCFPASVILMLPFILSFSVKLGE------NINEESVEKMAGLIEDLVT 403


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,188,010
Number of Sequences: 27780
Number of extensions: 339684
Number of successful extensions: 795
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)