Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0360
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   2.8  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   2.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.9  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 347 KYTYCFSNKMSSMTPKVVMFNLEIGEP-QTKSGNENEADHNKLEDMIKELATT 502
           +Y  CF +  S +TP  V F   I E  QT+     E     L D + E  TT
Sbjct: 44  QYYDCFIDAGSCLTPDSVFFKSHITEAFQTQCKKCTEIQKQNL-DKLAEWFTT 95


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 347 KYTYCFSNKMSSMTPKVVMFNLEIGEP-QTKSGNENEADHNKLEDMIKELATT 502
           +Y  CF +  S +TP  V F   I E  QT+     E     L D + E  TT
Sbjct: 44  QYYDCFIDAGSCLTPDSVFFKSHITEAFQTQCKKCTEIQKQNL-DKLAEWFTT 95


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 260 LHNI*ETTFCYFKR 219
           ++N  + TFCYF+R
Sbjct: 530 IYNWFQNTFCYFRR 543


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,447
Number of Sequences: 438
Number of extensions: 4434
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)