Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0359
         (698 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P19817 Cluster: Lipopolysaccharide 1,2-glucosyltransfer...    34   2.9  
UniRef50_A4TYS4 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  
UniRef50_A7FUP6 Cluster: TraX family protein; n=4; Clostridium b...    33   8.9  

>UniRef50_P19817 Cluster: Lipopolysaccharide
           1,2-glucosyltransferase; n=7; Enterobacteriaceae|Rep:
           Lipopolysaccharide 1,2-glucosyltransferase - Salmonella
           typhimurium
          Length = 336

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 16/47 (34%), Positives = 29/47 (61%)
 Frame = +1

Query: 370 DNNNRKYSNVLCDSLIVFRFPSCATKGPKLLLSHPDLINYQNILINS 510
           D +++KYSN++ D+ I+  +   ATK      ++P +I Y+N  +NS
Sbjct: 244 DKSHKKYSNIINDNTILIHYTG-ATKPWHAWANYPSVIYYKNARLNS 289


>UniRef50_A4TYS4 Cluster: Putative uncharacterized protein; n=1;
           Magnetospirillum gryphiswaldense|Rep: Putative
           uncharacterized protein - Magnetospirillum
           gryphiswaldense
          Length = 62

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = -3

Query: 225 AMSPPRAEDSFHISFKDRD 169
           AMSPPRAEDS H+  +DRD
Sbjct: 42  AMSPPRAEDSTHLIRQDRD 60


>UniRef50_A7FUP6 Cluster: TraX family protein; n=4; Clostridium
           botulinum|Rep: TraX family protein - Clostridium
           botulinum (strain ATCC 19397 / Type A)
          Length = 233

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 424 GKQLMNRTIRYYTFYCYYPLHNWII 350
           GK+ +N     Y FY +YP+H WII
Sbjct: 201 GKRGLNNKFIKYMFYAFYPVHLWII 225


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 600,575,429
Number of Sequences: 1657284
Number of extensions: 10635491
Number of successful extensions: 17148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17148
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)