Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0359
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    27   3.4  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    26   6.0  
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.9  

>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +1

Query: 385 KYSNVLCDSLIVFRFPSCATKGPKLLLSHPDLINYQNILINSFICFINFYRK 540
           + SN+LC  + +F F  CA     +++   +  +Y   L+N+       Y K
Sbjct: 114 RISNLLCSVIDLFEFVRCAHPDKMVVMKAEEAYSYLFELMNTLNTHQGLYEK 165


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 88  SHFSTHGASFYLK*LDDFFMQ 26
           +H S HGA F+L   +DF MQ
Sbjct: 374 THLSDHGAHFHLGNANDFNMQ 394


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 234 TAIAMSPPRAEDSFHISFKDRDYDD 160
           ++I+++   A+DS H SF   D DD
Sbjct: 155 SSISLAAITADDSLHNSFSSNDIDD 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,535
Number of Sequences: 5004
Number of extensions: 49583
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)