Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0359
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125954-3|AAD14706.3|  323|Caenorhabditis elegans Serpentine re...    30   1.8  
AC006769-4|AAF60584.1|  323|Caenorhabditis elegans Hypothetical ...    30   1.8  
U28944-13|AAA68372.1|  365|Caenorhabditis elegans Hypothetical p...    29   4.2  
Z81086-1|CAB03120.2|  258|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF125954-3|AAD14706.3|  323|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 71 protein.
          Length = 323

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/81 (24%), Positives = 37/81 (45%)
 Frame = +1

Query: 409 SLIVFRFPSCATKGPKLLLSHPDLINYQNILINSFICFINFYRKXXXXXXXXXXXXXFI* 588
           S+ +  F  C+  GP+  L+  +L+N    L+ + +  + +YR+             FI 
Sbjct: 71  SIALLSFGPCSIVGPQACLATYNLLNTSGCLVVASLLHMMYYRRRLMSSVRRLSTQKFI- 129

Query: 589 YSD*F*TFYVFSNFISLFAFL 651
             + F   Y FS  + +F+FL
Sbjct: 130 -GNCF-VVYFFSAVVLIFSFL 148


>AC006769-4|AAF60584.1|  323|Caenorhabditis elegans Hypothetical
           protein Y45G12C.9 protein.
          Length = 323

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/81 (24%), Positives = 37/81 (45%)
 Frame = +1

Query: 409 SLIVFRFPSCATKGPKLLLSHPDLINYQNILINSFICFINFYRKXXXXXXXXXXXXXFI* 588
           S+ +  F  C+  GP+  L+  +L+N    L+ + +  + +YR+             FI 
Sbjct: 71  SIALLSFGPCSIVGPQACLATYNLLNTSGCLVVASLLHMMYYRRRLMSSVRRLSTQKFI- 129

Query: 589 YSD*F*TFYVFSNFISLFAFL 651
             + F   Y FS  + +F+FL
Sbjct: 130 -GNCF-VVYFFSAVVLIFSFL 148


>U28944-13|AAA68372.1|  365|Caenorhabditis elegans Hypothetical
           protein C18A3.1 protein.
          Length = 365

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 123 SLLPSTYSKTFPPILAHTEQAFT*N 49
           SLLPST+S  + P L  +E  FT N
Sbjct: 338 SLLPSTHSVGYEPFLLQSEHVFTRN 362


>Z81086-1|CAB03120.2|  258|Caenorhabditis elegans Hypothetical
           protein F53B6.1 protein.
          Length = 258

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 394 YYTFYCYYPLHNWIIQTTDNKKMLCPS*AVI 302
           YYT  CY PL N ++   +    LC + A++
Sbjct: 211 YYTSTCYEPLQNDLLHVMNVASWLCITNAIV 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,145,775
Number of Sequences: 27780
Number of extensions: 264205
Number of successful extensions: 422
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)