Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0359
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    27   0.17 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.91 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.91 
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   8.5  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 439 ATKGPKLLLSHPDLINYQNILINSFICFIN 528
           AT+ P LLL+ P+LI  ++ILI  F  F N
Sbjct: 77  ATRSPFLLLNDPELI--KDILIRDFSKFAN 104


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 442 SHKRETGKQLMNRTIRYYTFYCYYPLH 362
           +++  +G+ LM RT+R     CYYP H
Sbjct: 368 TNRYSSGRVLM-RTVRGKEKTCYYPYH 393


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 442 SHKRETGKQLMNRTIRYYTFYCYYPLH 362
           +++  +G+ LM RT+R     CYYP H
Sbjct: 368 TNRYSSGRVLM-RTVRGKEKTCYYPYH 393


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 422 SGFPLVRQKDLSFC 463
           SG+P +RQ   S+C
Sbjct: 23  SGYPSIRQGTTSYC 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,279
Number of Sequences: 438
Number of extensions: 3408
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)