Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0358
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    32   0.091
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    30   0.37 
SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz...    29   0.85 
SPBC530.03c |bag102|bag1-b|BAG family molecular chaperone regula...    27   2.0  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    27   3.4  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   4.5  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    26   4.5  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    26   6.0  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   6.0  
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    25   7.9  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    25   7.9  

>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 31.9 bits (69), Expect = 0.091
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 325 INAQMFDTKYGPNFVQYLLTLLAPDNLP-ANIMLTMRVLVNAFSDLPGEMLVLAARETVM 501
           + A M  T+Y P F   + T + P  LP AN+  T     +A ++     +      +++
Sbjct: 13  VTAVMAQTEYTPGFTTDVATTVTPTPLPSANVTTTS--FSSASTETSTHSVTSTNITSIV 70

Query: 502 HSPYASHNSITT 537
             P  SHNS TT
Sbjct: 71  PPPSTSHNSTTT 82


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 476 TSISPGRSLNA-FTSTRIVNIMFAGRLSGANNVSRYWTKFGPYLVSNICALICLFRTASL 300
           T +  G  LN+ F +  I++ +  G   GA  V  Y+ + GP +V  +   IC F  AS+
Sbjct: 291 TQVFRGTGLNSPFLAALILDAVNFGCTFGAIFVLEYFGRRGPLIVGGVWQSICFFIYASV 350


>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 47  STEKPFVPHDSYIRFDQANIKAIYDKLREFN 139
           S  K   P D+++ F+  N + IY+  R FN
Sbjct: 224 SWAKKITPEDAHVNFESMNTQQIYNMSRAFN 254


>SPBC530.03c |bag102|bag1-b|BAG family molecular chaperone
           regulator|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 206

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 146 VGDGHNPLSDEQLQNVVKLGELNSTHDPETLTLLKKSWNGRKRYCSR 286
           V D H  LS+  L  ++KL  +N   DPE     K++    ++Y S+
Sbjct: 151 VQDLHTRLSETLLARMIKLDAVNVEDDPEARLKRKEAIRLSQQYLSK 197


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 164 PLSDEQLQNVVKLGELNSTHDPETLTLLKKSWNGRKRYC 280
           PLS +  Q V+++ +L+S       TL+ + W+    YC
Sbjct: 486 PLSGQLYQKVIEMNDLDSIPSKLLQTLVDQIWSLLPGYC 524


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 431 RIVNIMFAGRLSGANNVSRYWTKFGPYLVSNICA 330
           +IVN +    L+   N   Y    GPYL +++CA
Sbjct: 31  QIVNPVLLDNLNHPTNGGLYDLALGPYLKNSVCA 64


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
 Frame = +1

Query: 301 RLAVRNKQINAQMFDTKYGPNFV----QYLLTLLA-PDNLPANIMLTMRVLVNAFSDLPG 465
           RLAV + + N ++FDT    N++     +  ++ A P+++P ++    R LV+  SD  G
Sbjct: 587 RLAVASDEPNVRIFDTVSNRNWICSIPSHSDSIAAEPNSVPTSVQYKDRFLVDGKSD--G 644

Query: 466 EMLVLAA 486
            + V +A
Sbjct: 645 SVSVFSA 651


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +2

Query: 74  DSYIRFDQANIKAIYDK-LREFNSKVGDGHNPLSDEQLQNVVKLGELNSTHDPETLTLLK 250
           +S +  D  N +A Y++ L EF  ++      L  ++++NVV+L ++      ++L LLK
Sbjct: 164 ESKLEEDLRNARAKYEESLEEFEDRMVQ-LKELEPDRVENVVRLLQMQIRFHQKSLDLLK 222


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +2

Query: 44  ISTEKPFVPHDSYIRFDQANIKAIYDKLREFNSKVGDGHNPLSDEQLQNVVKLGELNSTH 223
           +S+EK  V    + R  Q  IK+I     +FN  + D    + DE  + V    ELN  +
Sbjct: 1   MSSEKVLVGEYLFTRLLQLGIKSILGVPGDFNLALLDLIEKVGDETFRWVGNENELNGAY 60

Query: 224 DPETLTLLK 250
             +    +K
Sbjct: 61  AADAYARVK 69


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 396 WRQQCEQILDKVRSVFSVEH 337
           WR QCE +LD++   +   H
Sbjct: 61  WRSQCEPLLDEIAKTWKRVH 80


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 25/89 (28%), Positives = 39/89 (43%)
 Frame = +2

Query: 125 LREFNSKVGDGHNPLSDEQLQNVVKLGELNSTHDPETLTLLKKSWNGRKRYCSRYWM*QG 304
           +++   K+    + ++DE  + + ++ E  +  D +TLT LKK    RK       M   
Sbjct: 118 IKKDGDKLVKNTDSITDETPKVLSEIKEHGTISDSKTLTDLKK----RKLVERNKIMYFS 173

Query: 305 WLSGTNRSTHRCSTLNTDRTLSSICSHCW 391
              G N S  +   LNTD T   I S  W
Sbjct: 174 LRKGPNFSL-QIEKLNTDLTAEMITSRSW 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,990
Number of Sequences: 5004
Number of extensions: 53907
Number of successful extensions: 215
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)