Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0358
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0205 + 12649724-12650191,12651493-12652025,12652114-126522...    30   2.0  
12_02_0093 + 13536684-13536782,13537055-13537057,13537626-135376...    29   4.7  
01_06_1308 - 36159406-36159536,36159642-36160616,36161117-361612...    28   6.2  
12_02_0797 - 23230441-23230757,23230922-23231069,23231352-232325...    28   8.2  
03_02_0790 - 11212540-11212698,11212777-11212873,11212974-112130...    28   8.2  

>04_03_0205 +
           12649724-12650191,12651493-12652025,12652114-12652239,
           12652625-12652724,12652880-12652899,12653035-12653137,
           12653213-12653351,12653448-12653662,12653772-12654320
          Length = 750

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +3

Query: 417 NVDNASAGECVQRPPRRDAGAGR-QGNRYAFTICLTQLNNNTQVAACSLLLNLSVALAQQ 593
           NVDN      VQ+P +R AGAG+ +G ++A T       +   V   +  L+  +A    
Sbjct: 643 NVDNTENKVEVQQPHKRTAGAGKGKGGKWARTSSAPGDADARNVVTSTETLD-GIAAENV 701

Query: 594 PDSVELAEC 620
            D V++ +C
Sbjct: 702 ADLVQIEDC 710


>12_02_0093 +
           13536684-13536782,13537055-13537057,13537626-13537654,
           13539481-13539572,13539979-13540049,13540178-13540266,
           13540896-13541019,13541111-13541394,13541831-13541960,
           13542482-13543111
          Length = 516

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 333 CVDLFVPDSQPCYIQYREQ 277
           C+D+F P+ Q   I+YRE+
Sbjct: 265 CIDIFTPEEQKILIEYREK 283


>01_06_1308 -
           36159406-36159536,36159642-36160616,36161117-36161245,
           36161403-36161647,36161730-36161881,36161982-36162083
          Length = 577

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = -3

Query: 569 VQ*QGTRRYLSVVIELCEAYGECITVSLAASTSISPGRSLNAFTSTRIVNIMFAGRLSGA 390
           VQ QG  R+    +++  A   C T S+       PG  L A    R+V I     +  A
Sbjct: 22  VQAQGITRHYEFNVQMANATRLCNTKSMVTVNGQCPGPELVAREGDRVV-IRVTNNV--A 78

Query: 389 NNVSRYW 369
           +N+S +W
Sbjct: 79  HNISLHW 85


>12_02_0797 -
           23230441-23230757,23230922-23231069,23231352-23232562,
           23232639-23232894,23234073-23234309
          Length = 722

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 474 QHLSGEVAERIHQHSHCQHYVCR*VVWRQQCEQILDKVRSVF 349
           QH +  V E I+  S     + + V   QQC  +LD V S+F
Sbjct: 140 QHAASLVLEAIYLKSMSLQKLGKAVEAAQQCRSVLDAVESIF 181


>03_02_0790 -
           11212540-11212698,11212777-11212873,11212974-11213030,
           11213291-11213379,11213463-11213549,11213820-11213935,
           11214026-11214281,11214361-11214510,11214948-11215106,
           11215456-11215493,11215972-11216063,11216528-11216682,
           11217185-11217253
          Length = 507

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 524 LCEAYGECITVSLAASTSISPGRSLNA-FTSTRIVNIMFAGRLSGAN 387
           + EA      +++AASTS++PG+   +   + +++ ++  GRL   N
Sbjct: 1   MAEAIASAGGIAMAASTSLTPGQGCGSKGVNHQVIAVLLYGRLVAPN 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,426,984
Number of Sequences: 37544
Number of extensions: 382890
Number of successful extensions: 1114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)