Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0358
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_56375| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_53106| Best HMM Match : PLAT (HMM E-Value=0)                        29   3.6  
SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24)                 29   3.6  
SB_54329| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.16)              29   4.8  

>SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 300

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 25/81 (30%), Positives = 41/81 (50%)
 Frame = +1

Query: 259 EWPKEILFPVLDVTRLAVRNKQINAQMFDTKYGPNFVQYLLTLLAPDNLPANIMLTMRVL 438
           +WP + LFPVLD+ RL VR++ + A +     GP+ V+ LL +               + 
Sbjct: 34  QWPADSLFPVLDIVRLVVRHQSLAANV----SGPDLVEQLLMISG-------------IF 76

Query: 439 VNAFSDLPGEMLVLAARETVM 501
            N FS   G+ ++L  RE ++
Sbjct: 77  ANLFSSADGKAVILQYREKII 97


>SB_56375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 25/81 (30%), Positives = 41/81 (50%)
 Frame = +1

Query: 259 EWPKEILFPVLDVTRLAVRNKQINAQMFDTKYGPNFVQYLLTLLAPDNLPANIMLTMRVL 438
           +WP + LFPVLD+ RL VR++ + A +     GP+ V+ LL +               + 
Sbjct: 157 QWPADSLFPVLDIVRLVVRHQSLAANV----SGPDLVEQLLMISG-------------IF 199

Query: 439 VNAFSDLPGEMLVLAARETVM 501
            N FS   G+ ++L  RE ++
Sbjct: 200 ANLFSSADGKAVILQYREKII 220


>SB_53106| Best HMM Match : PLAT (HMM E-Value=0)
          Length = 1790

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 513  CLTQLNNNTQVAACSLLLNLSVALAQQPDSVELAEC 620
            CL+  N+  + AA  +L NLS       + +E+A+C
Sbjct: 1224 CLSHQNDQVRFAAACVLRNLSSGTKSDQNKLEIADC 1259


>SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24)
          Length = 540

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 357 TELCPVSAHIVGARQPTGKHNVDNASAGECVQRPPRRDAGAGRQG 491
           + LCP    IV  RQ     N   +++   +  PPRR  GA + G
Sbjct: 412 SSLCPGKIDIVKNRQTNPARNHHRSASVSNMSGPPRRGTGASQVG 456


>SB_54329| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.16)
          Length = 313

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 469 SLRGGR*THSPALALSTLCLPVGC-LAPTM*ADTGQSSVRI*CRTSVR*SVCSG 311
           S  GGR TH   L +   C+ V C +  T+   T   ++ + C  + R  +C G
Sbjct: 215 SYNGGRCTHKEELTVGKSCIHVACSVGSTVWLGTESGTLHVYCAITYR-ELCKG 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,031,443
Number of Sequences: 59808
Number of extensions: 439699
Number of successful extensions: 1195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)