Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0358
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18860.2 68416.m02396 transducin family protein / WD-40 repea...    38   0.005
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea...    38   0.005
At1g54760.1 68414.m06244 MADS-box family protein similar to MADS...    32   0.42 
At5g27970.1 68418.m03369 expressed protein                             29   2.2  
At5g10760.1 68418.m01250 aspartyl protease family protein contai...    29   3.0  
At5g23390.1 68418.m02736 expressed protein contains Pfam profile...    29   3.9  
At3g06030.1 68416.m00688 NPK1-related protein kinase, putative (...    28   6.8  
At5g48550.1 68418.m06003 F-box family protein-related similar to...    27   9.0  
At4g01790.1 68417.m00235 ribosomal protein L7Ae/L30e/S12e/Gadd45...    27   9.0  

>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to phospholipase a-2-activating protein
           SP:P27612 from [Mus musculus]
          Length = 760

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
 Frame = +1

Query: 262 WPKEILFPVLDVTRLAVRNKQINAQMFDTKYGPNFVQYLLTLL---APDN-LPANIMLTM 429
           WP  ++FP  D+ R+ V +    A +   K+  N    LL L+     D+ LPAN++ T+
Sbjct: 567 WPPAMMFPATDIVRMLVLHHH-GASLL-IKHVENNNDLLLDLIKKVTEDSALPANLLTTV 624

Query: 430 RVLVNAFSD 456
           RVLVN F +
Sbjct: 625 RVLVNLFKN 633



 Score = 32.3 bits (70), Expect = 0.32
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +3

Query: 501 AFTICLTQLNNNTQVAACSLLLNLSVALAQQPDSVELAECVLQLLQ 638
           AF+ C +  N N Q+A  +LLLN +V L ++ D    A+ +   LQ
Sbjct: 650 AFSNCYSSPNKNLQLAYSTLLLNYAVLLIEKKDQEGQAQVLSAALQ 695


>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to phospholipase a-2-activating protein
           SP:P27612 from [Mus musculus]
          Length = 760

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
 Frame = +1

Query: 262 WPKEILFPVLDVTRLAVRNKQINAQMFDTKYGPNFVQYLLTLL---APDN-LPANIMLTM 429
           WP  ++FP  D+ R+ V +    A +   K+  N    LL L+     D+ LPAN++ T+
Sbjct: 567 WPPAMMFPATDIVRMLVLHHH-GASLL-IKHVENNNDLLLDLIKKVTEDSALPANLLTTV 624

Query: 430 RVLVNAFSD 456
           RVLVN F +
Sbjct: 625 RVLVNLFKN 633



 Score = 32.3 bits (70), Expect = 0.32
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +3

Query: 501 AFTICLTQLNNNTQVAACSLLLNLSVALAQQPDSVELAECVLQLLQ 638
           AF+ C +  N N Q+A  +LLLN +V L ++ D    A+ +   LQ
Sbjct: 650 AFSNCYSSPNKNLQLAYSTLLLNYAVLLIEKKDQEGQAQVLSAALQ 695


>At1g54760.1 68414.m06244 MADS-box family protein similar to
           MADS-box transcription factor GI:4837612 from
           [Antirrhinum majus]
          Length = 161

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = -3

Query: 347 VSNICALICLFRTASLVTSSTGNNISFGHSSFSSITLTFQDRECCSVLLI*QRSV 183
           +SN  +++C    A L  S +G   +FG  SF ++   F +RE  S L   QRSV
Sbjct: 17  ISNELSILCGAEVAFLGYSCSGKPYTFGSPSFQAVAERFLNREASSSL---QRSV 68


>At5g27970.1 68418.m03369 expressed protein
          Length = 1629

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +1

Query: 286  VLDVTRLAVRNKQINAQMFDTKYG--PNFVQYLLTLLAPDNLPANIMLTMRVLVNAF 450
            +L +  LA++   IN++ F+T+YG  P  ++++L +L     P ++     +L+  F
Sbjct: 1201 LLGIVDLAIKQAIINSENFETEYGHVPPVLRHVLEILPSLGPPEHLSSMWLILLREF 1257


>At5g10760.1 68418.m01250 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 464

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 65  VPHDSYIRFDQANIKAIYDKL 127
           V HD  IR DQA +++IY KL
Sbjct: 83  VDHDEIIRRDQARVESIYSKL 103


>At5g23390.1 68418.m02736 expressed protein contains Pfam profile:
           PF04842 plant protein of unknown function (DUF639)
          Length = 730

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
 Frame = +3

Query: 462 RRDAGAGRQGNRYAFTIC----LTQLN--NNTQVAACSLLLNLSVALAQQPDSVELAECV 623
           R+ + +GR G+     I     + QL+   N+ V+ CS +LN+     Q    VEL E V
Sbjct: 32  RKKSSSGRDGDASPSPIASPKPIPQLSLLANSVVSRCSKILNIQTEDLQHHFDVELPESV 91

Query: 624 LQLL 635
            QLL
Sbjct: 92  KQLL 95


>At3g06030.1 68416.m00688 NPK1-related protein kinase, putative
           (ANP3) similar to protein kinase [Nicotiana tabacum]
           gi|456309|dbj|BAA05648; identical to cDNA NPK1-related
           protein kinase 3 GI:2342426
          Length = 651

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
 Frame = +1

Query: 310 VRNKQINAQMFDTKYGPNFVQYLLTLLAPDNLPANIML------TMRVLVNAFSDLPGEM 471
           +R  +   Q+      PN V+YL T+   D+L  NI++      ++  L+  F   P  +
Sbjct: 115 IRELEEEVQLLKNLSHPNIVRYLGTVRESDSL--NILMEFVPGGSISSLLEKFGSFPEPV 172

Query: 472 LVLAARETVMHSPYASHNSI 531
           +++  ++ ++   Y  +N I
Sbjct: 173 IIMYTKQLLLGLEYLHNNGI 192


>At5g48550.1 68418.m06003 F-box family protein-related similar to
           unknown protein (gb AAF19735.1); contains TIGRFAM
           TIGR01640 : F-box protein interaction domain
          Length = 427

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 305 SLVTSSTGNNISFGHSSFSSITLT 234
           SL  SS+ + + FGH SFSS T+T
Sbjct: 180 SLDISSSASALPFGHVSFSSSTVT 203


>At4g01790.1 68417.m00235 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein / ribonuclease P-related similar to human
           RNaseP-associate protein P38, GenBank accession number
           U77664
          Length = 167

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 24/79 (30%), Positives = 38/79 (48%)
 Frame = +1

Query: 199 IRRTEQHSRS*NVNVIEEKLEWPKEILFPVLDVTRLAVRNKQINAQMFDTKYGPNFVQYL 378
           I+R  + S+  NVN + EK+   K+I   + +VTR+  R    N    D +  P  +Q  
Sbjct: 38  IQRGIETSKLSNVNSLPEKIWLKKQIAIGINEVTRVLERMNPNNTS--DQQQNPKQLQ-- 93

Query: 379 LTLLAPDNLPANIMLTMRV 435
           + +L  D  P   MLT  +
Sbjct: 94  VVILVADCKPR--MLTKHI 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,325,480
Number of Sequences: 28952
Number of extensions: 290294
Number of successful extensions: 854
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)