Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0357
         (699 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2DAH6 Cluster: Putative uncharacterized protein; n=1; ...    36   0.96 
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    36   1.3  
UniRef50_A5K3Y1 Cluster: Putative uncharacterized protein; n=1; ...    34   3.9  
UniRef50_Q11YE3 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  
UniRef50_A3LTG8 Cluster: Predicted protein; n=1; Pichia stipitis...    33   8.9  

>UniRef50_A2DAH6 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 499

 Score = 35.9 bits (79), Expect = 0.96
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = -1

Query: 327 DRISYLLAKYIINGYSLTISDFFLLNL-KLYTPHSAAHTA*SQRLTPLGLFEYG*FCMYY 151
           DR+   L KYIIN ++    D FLL+L ++Y   S    +     T L   +Y  F + Y
Sbjct: 73  DRMKQELEKYIINRFTYHYMDKFLLSLVRIYIQQSI--ISFEPIKTFLEKIDYQDFHIIY 130

Query: 150 KYYLTVLVEFDKKSSTCNLTH 88
            YY+  L EF  +S      H
Sbjct: 131 PYYILFLYEFFPESEQYRYKH 151


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -1

Query: 75  PLSFPPDLLSGSRFRSG 25
           PLSF PDLLSGSRFR+G
Sbjct: 396 PLSFSPDLLSGSRFRTG 412


>UniRef50_A5K3Y1 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 3001

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = -1

Query: 165 FCMYYKYYLTVLVEFDKKSSTCNLTHTSISPLSF 64
           FC+Y + ++ +L+   KKSS+ N+T T++  LS+
Sbjct: 522 FCIYNEVFINILLSILKKSSSKNVTETALLTLSY 555


>UniRef50_Q11YE3 Cluster: Putative uncharacterized protein; n=1;
           Cytophaga hutchinsonii ATCC 33406|Rep: Putative
           uncharacterized protein - Cytophaga hutchinsonii (strain
           ATCC 33406 / NCIMB 9469)
          Length = 317

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
 Frame = +3

Query: 87  YGLGCTSNSFCRIRRVRLNNTYNTYKTIRTRTTP-MESSAVTKLYALLNVAYTT*DL-IG 260
           +G GC+   FC +  +R N T++    ++ R+   ++ + VTK + ++  +    ++ IG
Sbjct: 25  FGQGCSDAGFCTMGAMRPNQTFSHKAAVKLRSVEFLQYAGVTKFHDVILTSLVDINIGIG 84

Query: 261 KNH**SKNIRLLYTSLTSN 317
           K    S  I+L YT ++ +
Sbjct: 85  KRG--SAQIKLPYTCVSGS 101


>UniRef50_A3LTG8 Cluster: Predicted protein; n=1; Pichia
           stipitis|Rep: Predicted protein - Pichia stipitis
           (Yeast)
          Length = 340

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 496 NISLKFLSITSYVRVMY-RTGHARIHISTFTSLYSNRSIKRQNTFSTHIQRYSL 338
           +I+ + LS   Y+++++ R GH++   + +   +SN  +  +      I+RYSL
Sbjct: 48  DINKQLLSYKEYLQILHNRLGHSKSDTAVYDQYHSNHKLNNEIIHKQRIERYSL 101


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,449,012
Number of Sequences: 1657284
Number of extensions: 12070906
Number of successful extensions: 21880
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21871
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)