Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0357
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    25   0.59 
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    23   2.4  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   2.4  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   4.2  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   7.3  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   7.3  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -3

Query: 304  EVYNKRIFFDYQ*FFPIKSQVVYATFSSAYSLV 206
            ++ N+R  F+   FFPI   +V++ F+S+  ++
Sbjct: 1065 QILNERAEFNAAGFFPIDYTLVFSKFTSSIRML 1097


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 416 HFYIALLKP*YKAPEHVQHSYTAVL 342
           H+Y   LK   KAP+ V   Y ++L
Sbjct: 3   HYYRLSLKSRQKAPKIVNSKYNSIL 27


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 416 HFYIALLKP*YKAPEHVQHSYTAVL 342
           H+Y   LK   KAP+ V   Y ++L
Sbjct: 3   HYYRLSLKSRQKAPKIVNSKYNSIL 27


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 126 RRVRLNNTYNTYKTI 170
           RR R+NN+ N  KT+
Sbjct: 46  RRARINNSLNELKTL 60


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 179 NNPNGVKRCD*AVC 220
           N+PN    CD AVC
Sbjct: 155 NDPNRAPPCDPAVC 168


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 279 KNIRLLYTSLTSN*FYLC 332
           K+ ++LYTSLTS  +  C
Sbjct: 58  KSWKVLYTSLTSFGYLFC 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,141
Number of Sequences: 336
Number of extensions: 3476
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)