Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0357
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   2.6  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    27   2.6  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    27   3.4  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.5  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    26   6.0  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   7.9  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    25   7.9  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -1

Query: 411 LHRFTQTVV*SARTRSALIYSGTHSSYIDRISYLLAKYIINGYSLTISDF-FLLNLKLYT 235
           LH   + +   +R    L  S  +  Y D    L A Y+I GYSL+  D  F L   L++
Sbjct: 347 LHHLLENLSKESRLHILLQLSQLYYKYND--FQLSAAYVIRGYSLSFEDISFKLKFLLFS 404

Query: 234 PHSAAH 217
              + H
Sbjct: 405 FRLSIH 410


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 336 SYIDRISYLLAKYIINGYSLTISDFFL 256
           S++  IS L  +Y+ NG+S T+SD  L
Sbjct: 485 SFLCSISKLENRYLSNGHSATLSDLLL 511


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 466 SYVRVMYRTGHARIH--ISTFTSLYSNRSIKRQNTFSTHIQRYSL 338
           S+ R  +   H R H  +  F+  + NR+  R +  + H+Q+  L
Sbjct: 36  SFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHL 80


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 474 QLRHMYESCIVQGTRAFTSALLHRFTQTVV*SARTRSA 361
           QL+H+YES + + + AF SA   +    +  S  + SA
Sbjct: 235 QLQHIYESVVEEKSEAFASATSSKILSEMSASMASSSA 272


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 576 YNNLRVVFLLGYVIHSSRG*FMRRVRQIFP*NSF 475
           YNNL  +F +GY++    G +   + Q FP   F
Sbjct: 139 YNNLNTLFYVGYIVGQFPGHY---IMQTFPLGKF 169


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 77  LIDVWVRLHVELFLSNST 130
           LI +WVRL   LFL  ST
Sbjct: 306 LIFIWVRLFARLFLRGST 323


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 479  EF*GNICLTLLINHPRDE*ITYPNKKTTRKLL 574
            E+   ICL + +N P+ E + +P    TR+ L
Sbjct: 1010 EYISRICLNIDVNDPKVETVVHPVLTLTREAL 1041


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,955
Number of Sequences: 5004
Number of extensions: 55200
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)