Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0357
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)          29   3.6  
SB_970| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.4  

>SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -2

Query: 458 TSHVSYRARAHSHQHFYIALLKP*YKAPEHVQHSYTAVLTHHT 330
           T H  Y A +  H H   AL  P      HVQH+   V  H+T
Sbjct: 223 TIHAPY-AHSTRHTHRMCALHAPYAHTTRHVQHTTRTVCAHYT 264


>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
          Length = 1163

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = -2

Query: 476  FNYVICTSHVSYRARAHSHQHFYIALLKP*YKAPEHVQHSYTAVLTHHT*IELVT 312
            F + I T H  +    H   H++  ++   Y  P    H + +++THH    ++T
Sbjct: 1054 FFFSIITDHYFFSIITH---HYFFVIITHHYIFPIITHHDFFSIITHHYFFSIIT 1105


>SB_970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 384

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 144 NTYNTYKTIRTRTTPMESSAVTKLYALLNVAYTT*DLI 257
           N +NT KT++    P   SA+     LL++A    DL+
Sbjct: 191 NVFNTNKTVQPPQVPFHCSALLSWGLLLSIANNAEDLV 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,971,015
Number of Sequences: 59808
Number of extensions: 401063
Number of successful extensions: 673
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)