Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0357
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55790.1 68414.m06388 hypothetical protein                          30   1.7  
At1g55800.1 68414.m06390 hypothetical protein                          29   2.2  

>At1g55790.1 68414.m06388 hypothetical protein
          Length = 414

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +2

Query: 164 NYP-YSNNPNGVKRCD*AVCAAECGVYNLRFNR 259
           NYP Y N     +RCD      EC  +  RF+R
Sbjct: 188 NYPGYENKRGDGRRCDQPFLLGECSTFKFRFSR 220


>At1g55800.1 68414.m06390 hypothetical protein
          Length = 314

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +2

Query: 161 QNYP-YSNNPNGVKRCD*AVCAAECGVYNLRFNR 259
           +NYP Y N      RCD      EC  +  RF+R
Sbjct: 187 RNYPGYENKRGDGSRCDQPFLLGECSTFKFRFSR 220


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,633,285
Number of Sequences: 28952
Number of extensions: 264682
Number of successful extensions: 446
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)