Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0356
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0507 + 24402239-24402297,24402686-24402753,24403704-244037...    37   0.018
01_05_0650 + 23925913-23926025,23926128-23926388,23927431-239274...    34   0.12 
02_02_0640 - 12528075-12528363,12531326-12532311                       31   0.67 
01_07_0157 - 41547505-41547861,41547949-41548078,41548180-415484...    30   2.0  
02_04_0359 - 22350435-22351040                                         28   8.2  

>11_06_0507 +
           24402239-24402297,24402686-24402753,24403704-24403785,
           24403894-24403945,24405368-24405413,24405568-24405626,
           24405736-24405803,24406009-24406119,24406236-24406312,
           24406478-24406554
          Length = 232

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +1

Query: 328 ARLRNLNPYELHKYLVNVYSLNTKGSTTRLKRDTSRDRTDLDVIRENHKF-LWEDDDVAD 504
           + +R LN Y+ HK  +  Y +   G    +  + +  +TD D +RE ++F L E+DDV  
Sbjct: 24  SHIRGLNAYDRHKKFMKDY-VQFYGHDKNVD-NRAPIKTDKDTLREGYRFILSEEDDVDS 81

Query: 505 TWK 513
           TW+
Sbjct: 82  TWE 84


>01_05_0650 +
           23925913-23926025,23926128-23926388,23927431-23927449,
           23927526-23927745,23927871-23928052,23928158-23928447,
           23928621-23928750,23928888-23929235
          Length = 520

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -2

Query: 478 EICGFL*SHRGQFYLWTCRVSSASWSP---WYSGYKRLLGTYAIHKD*DYATWQ 326
           EIC    +  G +Y W+ R+S   W+P   W +G+  ++G +A+    D++  Q
Sbjct: 92  EICSSFPTSGGLYY-WSARLSGKRWAPFASWITGWFNIVGQWAVTTSVDFSLAQ 144


>02_02_0640 - 12528075-12528363,12531326-12532311
          Length = 424

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = -2

Query: 529 FLANCFSM-CRLRHRLP-TEICGFL*SHRGQFYLWT-CRVSSASWSPWYSGYKRLLGTYA 359
           F +N +S    LR ++P T+ CGF+ +  G+ Y+ T  ++   + SPW    KRL   + 
Sbjct: 332 FSSNSWSKEATLRRKIPSTQSCGFI-AMNGELYVLTSAKLPVETSSPWKQSKKRLALEFQ 390

Query: 358 IHKD*DYATWQTSLA*PKTNV 296
           ++       W+     P  NV
Sbjct: 391 VYNP-AAKMWRVLTTHPPVNV 410


>01_07_0157 -
           41547505-41547861,41547949-41548078,41548180-41548469,
           41548561-41548742,41548838-41549057,41550806-41550824,
           41551104-41551364,41551466-41551584
          Length = 525

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -2

Query: 478 EICGFL*SHRGQFYLWTCRVSSASWSP---WYSGYKRLLGTYAIHKD*DYATWQ 326
           EIC    +  G +Y W+ +++   W+P   W +G+  + G +A     D+A  Q
Sbjct: 94  EICSAYPTSGGLYY-WSAKLAGNDWAPFASWITGWFNITGQWAATTSVDFALAQ 146


>02_04_0359 - 22350435-22351040
          Length = 201

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -3

Query: 546 RVCRDIFWLIVF 511
           R CRD+FWL+VF
Sbjct: 40  RRCRDVFWLVVF 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,443,439
Number of Sequences: 37544
Number of extensions: 283423
Number of successful extensions: 641
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)