Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0356
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)                34   0.13 
SB_25537| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_3533| Best HMM Match : Pentapeptide (HMM E-Value=5.7)               29   4.8  
SB_19552| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11)                 28   8.4  

>SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)
          Length = 1633

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 469 HKFLWEDDDVADTWKNN*PKNITTNSSKNIVFVI*ADTKKIE*VVNHCG 615
           H F WE+ D+    K +   ++ T S++N+VF+I +     E +   CG
Sbjct: 143 HDFQWENTDILSPIKGSRNVDVHTKSTRNVVFIISSCPSSKEDIDEFCG 191


>SB_25537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 494

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -2

Query: 295 KRFIEFIK*KKNLH--KQL--FNKIENYYIFSKIL*FSKRTYSNCHDESIT 155
           K F+   K K  +H  KQ+  FN++ +YY+F     F K+ Y   H E+ T
Sbjct: 438 KAFLSERKIKPVVHCRKQIIKFNELPSYYVFVNKTFFYKKVYDEKHGEAQT 488


>SB_3533| Best HMM Match : Pentapeptide (HMM E-Value=5.7)
          Length = 416

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 334 LRNLNPYELHKYLVNVYSLNTKGSTTRLKRDTSRDRTDLDVIRENHKFLW 483
           +RNL P  ++K +   Y   TKG+T    +D S    D+   R    FLW
Sbjct: 102 MRNLLPNSIYK-VYKSYQKRTKGTTQGRTQDFSGASADVGHARSPIGFLW 150


>SB_19552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 486 RR*RSRHMEKQLAKKYHDKLFKEYCICDLSRYKENRVSCE 605
           RR R R  EK+ AKK  D++ KE       + K  R  CE
Sbjct: 21  RRWRQRQKEKKRAKKQADEVVKEQPFVADEQSKSERRVCE 60


>SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11)
          Length = 2297

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 415  LKRDTSRDR-TDLDVIRENHKFLWE 486
            L R+  R R TD++V RE+ K LWE
Sbjct: 1716 LNRERPRPRSTDIEVPRESRKMLWE 1740


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,333,945
Number of Sequences: 59808
Number of extensions: 379624
Number of successful extensions: 807
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)