Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0356
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54342-16|CAA91156.1|  755|Caenorhabditis elegans Hypothetical p...    60   1e-09
Z47072-4|CAA87370.1|  755|Caenorhabditis elegans Hypothetical pr...    60   1e-09
Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical pr...    31   0.79 
AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane...    31   0.79 
Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical ...    29   3.2  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    29   3.2  
AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical ...    29   3.2  
AC024750-3|AAF60440.1|  384|Caenorhabditis elegans Hypothetical ...    28   5.6  

>Z54342-16|CAA91156.1|  755|Caenorhabditis elegans Hypothetical
           protein F26C11.1 protein.
          Length = 755

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 22/56 (39%), Positives = 40/56 (71%)
 Frame = +1

Query: 328 ARLRNLNPYELHKYLVNVYSLNTKGSTTRLKRDTSRDRTDLDVIRENHKFLWEDDD 495
           A++ ++N Y+ HK ++N+Y L+  G+T  L R    + TDLDV++++H+F+W +DD
Sbjct: 69  AKMMSMNAYDRHKEMINLYYLSYPGATKLLNRKIQDETTDLDVLKKHHRFVWSEDD 124



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 20/29 (68%), Positives = 25/29 (86%)
 Frame = +3

Query: 510 EKQLAKKYHDKLFKEYCICDLSRYKENRV 596
           E ++AKKY+DKLFKEYCI DLS YK N++
Sbjct: 137 ETRMAKKYYDKLFKEYCIVDLSMYKTNKI 165


>Z47072-4|CAA87370.1|  755|Caenorhabditis elegans Hypothetical
           protein F26C11.1 protein.
          Length = 755

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 22/56 (39%), Positives = 40/56 (71%)
 Frame = +1

Query: 328 ARLRNLNPYELHKYLVNVYSLNTKGSTTRLKRDTSRDRTDLDVIRENHKFLWEDDD 495
           A++ ++N Y+ HK ++N+Y L+  G+T  L R    + TDLDV++++H+F+W +DD
Sbjct: 69  AKMMSMNAYDRHKEMINLYYLSYPGATKLLNRKIQDETTDLDVLKKHHRFVWSEDD 124



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 20/29 (68%), Positives = 25/29 (86%)
 Frame = +3

Query: 510 EKQLAKKYHDKLFKEYCICDLSRYKENRV 596
           E ++AKKY+DKLFKEYCI DLS YK N++
Sbjct: 137 ETRMAKKYYDKLFKEYCIVDLSMYKTNKI 165


>Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical
           protein C08B11.4 protein.
          Length = 822

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 142 LNSKNFLLMCQ*IKGILCYFVQKLISTLNIIVSLVDFVYNFH 17
           L+   FL MC  I G   Y++   ++T N++ +L++F   FH
Sbjct: 378 LHGVRFLSMCWIILGHTYYYIGTSLTTDNLVPTLINFPKQFH 419


>AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane
           protein NRF-6 protein.
          Length = 822

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 142 LNSKNFLLMCQ*IKGILCYFVQKLISTLNIIVSLVDFVYNFH 17
           L+   FL MC  I G   Y++   ++T N++ +L++F   FH
Sbjct: 378 LHGVRFLSMCWIILGHTYYYIGTSLTTDNLVPTLINFPKQFH 419


>Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9b protein.
          Length = 625

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 465 KPQISVGRR*RSRHMEKQLAKKYHDKLFKEYCICDLSRYKENRVSCESLRVLRCRN 632
           K +I V  R  +R   K+  + Y D+ F   C CDLS +++ R  C   R  + R+
Sbjct: 88  KSKIFVAVRFENRDEAKEFMETYSDREFMG-CRCDLSWFRDIRRYCAYQRAKQVRS 142


>Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9a protein.
          Length = 553

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 465 KPQISVGRR*RSRHMEKQLAKKYHDKLFKEYCICDLSRYKENRVSCESLRVLRCRN 632
           K +I V  R  +R   K+  + Y D+ F   C CDLS +++ R  C   R  + R+
Sbjct: 88  KSKIFVAVRFENRDEAKEFMETYSDREFMG-CRCDLSWFRDIRRYCAYQRAKQVRS 142


>U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical protein
            ZC53.4 protein.
          Length = 1410

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
 Frame = +1

Query: 364  KYLVNVYSLNTKGSTTRLKRDTSRDRTDLDVIRENHKFLWEDDDVA----DTWKNN*PKN 531
            K+  N   +N    + R+  D SR +    +  +    +W+  +      ++W  +  ++
Sbjct: 848  KFNKNCKKINRLRPSRRMTTDNSRVKHRYIIYADFESIIWKFSNAHYKPNESWTMDVGEH 907

Query: 532  ITTNSSKNIVFVI*ADTKKIE*VVNHCGYCGVVTYNLKTSYTSQRIYGLP 681
            +   +S+  V V+ + TKKI  + ++ GY   + +N      SQ I  LP
Sbjct: 908  V---ASRFCVVVVDSFTKKIHNMKSYIGYNATLEFNKYIIKISQEIMSLP 954


>AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical
           protein F33H12.6 protein.
          Length = 1360

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 331 RLRNLNPYELHKYLVNVYSLNTKGSTTRLKRDTSRDRTDLDVI 459
           R+  + PYE  +Y + +  LN KG+T+     T  D  ++ V+
Sbjct: 746 RMYTVPPYETERYALRILLLNIKGATSFEDLRTVLDENNVPVV 788


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 331 RLRNLNPYELHKYLVNVYSLNTKGSTTRLKRDTSRDRTDLDVI 459
           R+  + PYE  +Y + +  LN KG+T+     T  D  ++ V+
Sbjct: 782 RMYTVPPYETERYALRILLLNIKGATSFEDLRTVLDENNVPVV 824


>AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical
            protein F59H6.5 protein.
          Length = 1486

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 331  RLRNLNPYELHKYLVNVYSLNTKGSTTRLKRDTSRDRTDLDVI 459
            R+  + PYE  +Y + +  LN KG+T+     T  D  ++ V+
Sbjct: 872  RMYTVPPYETERYALRILLLNIKGATSFEDLRTVLDENNVPVV 914


>AC024750-3|AAF60440.1|  384|Caenorhabditis elegans Hypothetical
           protein Y17G9A.4 protein.
          Length = 384

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -2

Query: 190 RTYSNCHDESITRCIYLNSKNFLLMCQ*IKGILCYFVQKLISTLNIIVSLVDFVYNFHIW 11
           R  ++C + S  +C+ L   + L +C  I   L YF+QK I T N+  S +    ++ IW
Sbjct: 5   RRTTDC-ENSPKQCLLLILIS-LFLCGLIAFGLTYFIQKWIETENVETSGIPLKMDY-IW 61

Query: 10  PR 5
           P+
Sbjct: 62  PQ 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,682,416
Number of Sequences: 27780
Number of extensions: 301856
Number of successful extensions: 696
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)