Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0356
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.5  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 487 DDDVADTWKNN*PKNIT 537
           DDD  D WKN   KN+T
Sbjct: 5   DDDSYDFWKNWDLKNLT 21


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +1

Query: 448 LDVIRENHKFLWEDDDVADTWKNN---*PKNITT 540
           LD I EN      D   A TWK+N    P+N+T+
Sbjct: 72  LDSIDENSMTYAADIFFAQTWKDNRLRLPENMTS 105


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/21 (33%), Positives = 9/21 (42%)
 Frame = +1

Query: 481 WEDDDVADTWKNN*PKNITTN 543
           W  DD+   WK   P  +  N
Sbjct: 183 WTTDDLVFLWKEGDPVQVVKN 203


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/21 (33%), Positives = 9/21 (42%)
 Frame = +1

Query: 481 WEDDDVADTWKNN*PKNITTN 543
           W  DD+   WK   P  +  N
Sbjct: 183 WTTDDLVFLWKEGDPVQVVKN 203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,082
Number of Sequences: 438
Number of extensions: 3827
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)