Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0355
         (701 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    51   3e-05
UniRef50_Q5LN79 Cluster: Conserved domain protein; n=7; Rhodobac...    33   5.1  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 50.8 bits (116), Expect = 3e-05
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = -2

Query: 157 FLLLRWVDELAAHLVLSGYWSP 92
           FLLLRWVDEL AHLVLSGYWSP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_Q5LN79 Cluster: Conserved domain protein; n=7;
           Rhodobacteraceae|Rep: Conserved domain protein -
           Silicibacter pomeroyi
          Length = 528

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 13/35 (37%), Positives = 25/35 (71%)
 Frame = -1

Query: 458 ILNGSKFSYINNIFDSIYILWSIGLSTESIRKGPK 354
           I+ G + +Y++ +FDS  +++S GL++ES   GP+
Sbjct: 443 IVPGGRITYVHVMFDSHQVIYSEGLASESFLPGPQ 477


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 688,471,652
Number of Sequences: 1657284
Number of extensions: 13178637
Number of successful extensions: 26444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26443
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)