Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0355
         (701 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    27   0.20 
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   1.8  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    23   3.2  

>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 228 KIEFSFHQTNHITSFLLVFIVCEVM-IFK 311
           KI +  HQ  HI     +F+VC V+ +FK
Sbjct: 105 KIGYWLHQICHICELHTIFLVCNVLTVFK 133


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 168 YSFLFHSPPAYKRWWS 215
           Y + +   P Y +WWS
Sbjct: 256 YRYCYRPYPVYNQWWS 271


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 249 DGN*IQSLRRLM--TTTVCMLVGNEIRSYRLFFFYCLD 142
           D N + SL  L+  T T  +LVG+      +FFF+  D
Sbjct: 246 DHNSLYSLHLLLWITVTFILLVGDSYIVMYVFFFHLSD 283


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,302
Number of Sequences: 336
Number of extensions: 3624
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)