Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0355
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c...    29   0.64 
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   2.0  

>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 313

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -1

Query: 515 QDREKSSTSCAKLSPTVRIILNGSKFSYINNIFDSIYILWSIGLSTESI 369
           Q+   S   C+ +SP ++ ++   K   +N +FD ++ L+  GLS  SI
Sbjct: 116 QELYSSCMHCSIMSPKLQKVMLAQKSLILNKVFDYLFFLY--GLSGTSI 162


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/73 (23%), Positives = 31/73 (42%)
 Frame = -1

Query: 557 DGVEREGTEARRS*QDREKSSTSCAKLSPTVRIILNGSKFSYINNIFDSIYILWSIGLST 378
           D +  E T A      +   +    K+ P V +++  ++F  +  +   I I+ S+G S 
Sbjct: 545 DALVSENTGAASQKTSKSYKTNDSLKVPPLVPLLIGTTRFFPVPLVSSQIAIISSLGPSY 604

Query: 377 ESIRKGPKNGTTT 339
               +GP N   T
Sbjct: 605 SGCFQGPINDYMT 617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,880,001
Number of Sequences: 5004
Number of extensions: 57451
Number of successful extensions: 129
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)