Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0355
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0885 + 22268287-22268988                                         32   0.38 
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340...    30   1.5  
03_04_0006 + 16257288-16259522                                         30   2.0  

>08_02_0885 + 22268287-22268988
          Length = 233

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = -1

Query: 689 GPFIFTFFCTRICRC*N-IEDPLVELNYNSHDFLQHVWRPFLLH*DGVEREGTEARRS*Q 513
           G  IF   C  +CRC + +E  L+ L    + FL    RP +L     E +   A +  Q
Sbjct: 112 GAIIFAS-CKSMCRCSSPLEAELLALREGIYLFLIWTLRPVIL-----ETDCLVALQMIQ 165

Query: 512 DREKSSTSCAKLSPTVRIILNGSK 441
            +E++++  A L   +R +LNGS+
Sbjct: 166 SKERATSELAYLVREIRDLLNGSR 189


>03_01_0438 +
           3399203-3399297,3399389-3399480,3399638-3399750,
           3400345-3400610,3400793-3400864,3401023-3401098,
           3401241-3401339,3401432-3401586,3401679-3401783,
           3401880-3401966,3402459-3402543,3402626-3402734,
           3403468-3403544,3403635-3403715,3404137-3404328,
           3404415-3404528,3404650-3404742,3404864-3404990,
           3405075-3405151,3405455-3405502,3405588-3405657,
           3405737-3405810,3405895-3406005,3406222-3406300,
           3406936-3408320
          Length = 1293

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
 Frame = +1

Query: 412 ESKILLM*LNLLPFKIIRTVGDSFAHD---VELFSRSCQL 522
           + +ILL  L+ LP K I  +GDSFA D   +++F++SC L
Sbjct: 324 KQRILL--LSDLPRKQIEKLGDSFAKDLNHIDVFTKSCSL 361


>03_04_0006 + 16257288-16259522
          Length = 744

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -1

Query: 452 NGSKFSYINNIFDSIYILWSIGLSTESIRKGPKNGTTTA 336
           +GSK ++++N F ++++  S GL     +KGP +  +TA
Sbjct: 408 DGSKLAFVDNEFKAVWLADSHGLRVVYEKKGPNSVFSTA 446


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,668,064
Number of Sequences: 37544
Number of extensions: 367374
Number of successful extensions: 648
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)