Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0355
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7654| Best HMM Match : MAM (HMM E-Value=0)                          29   2.8  
SB_47545| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  

>SB_7654| Best HMM Match : MAM (HMM E-Value=0)
          Length = 164

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 539 LRVQLRLSEGGMVSTHAEGNHGNCSLIQQVDLQYFNTYKF 658
           LRV ++ +    V    EGNH N  L  Q  L   +TYKF
Sbjct: 92  LRVLVKTNTSETVVWQQEGNHDNMWLFAQSTLYSTDTYKF 131


>SB_47545| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 406

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/69 (24%), Positives = 31/69 (44%)
 Frame = +3

Query: 84  NVYGLQ*PLNTRWAASSSTHLSNKKKTAYSFLFHSPPAYKRWWS*AFSKIEFSFHQTNHI 263
           +V+GL+    T +    +       +T +  L   PP  KR W     ++ F+++ T+H 
Sbjct: 151 SVHGLKKSKTTPYHTQGNGLCERLNRTLHELLRTLPPDKKRRWPDHLRQLCFAYNATSHS 210

Query: 264 TSFLLVFIV 290
           T+    F V
Sbjct: 211 TTGYSPFFV 219


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,039,878
Number of Sequences: 59808
Number of extensions: 405311
Number of successful extensions: 693
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)