Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0355
         (701 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ246816-11|ABB45478.1|  603|Homo sapiens NADH dehydrogenase sub...    30   9.2  

>DQ246816-11|ABB45478.1|  603|Homo sapiens NADH dehydrogenase
           subunit 5 protein.
          Length = 603

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +3

Query: 111 NTRWAASSSTHLSNKKKTAYSFLFHSPPAYKRWWS*AFSKIEF--SFHQTNHITSFLLVF 284
           N  WA + +T LS   K  Y  +  +P A    WS     + +  S    N    +LL+F
Sbjct: 65  NWHWATTQTTQLSLSFKLDYFSMMFTPVALFVTWSIMEFSLWYMNSDPNINQFFKYLLIF 124

Query: 285 IVCEVMIFKKNMLLE 329
           ++  +++   N L +
Sbjct: 125 LITMLILVTANNLFQ 139


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,722,156
Number of Sequences: 237096
Number of extensions: 2094323
Number of successful extensions: 6400
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 6345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6400
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)