Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0353
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    27   2.4  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    27   3.2  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.7  
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom...    25   9.7  

>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 286 FHVQNLLTNVLTLYSITPFGVSVFVILFTSSNHSSYSK 173
           F   N   N+L LYS+  +   + V  FT+  HS Y +
Sbjct: 560 FEYYNKPWNLLVLYSLLQYENKLTVSQFTAMQHSEYEE 597


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 175 KLYDALTNSIKWCTKLIHSIE*ARKCLLD*NELMHSER 62
           K  D   N IK C   +  +   ++CL D N  MH ++
Sbjct: 85  KSVDREQNRIKECLLFVRQVRDFKECLQDLNRAMHHQQ 122


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 240 LHLLECPYLLFYLPHRIIVLIL 175
           LH + C Y+   +PH+ I  IL
Sbjct: 850 LHQVTCSYISIRIPHKFIPFIL 871


>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 539 SNVNRILHVERIPYFFCIFG--IYTIFLYFCFCSAFFVKNKKKN 664
           +NV+R + +    Y   +F   + +IFLYF F   F ++N  +N
Sbjct: 109 TNVHRDIPIVVSGYLQLMFNACVASIFLYFLFKIVFGIQNDVRN 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,556
Number of Sequences: 5004
Number of extensions: 36288
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)