Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0352
         (698 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    41   0.025
UniRef50_Q22P58 Cluster: ABC transporter family protein; n=1; Te...    35   1.7  
UniRef50_Q7S1M5 Cluster: Putative uncharacterized protein NCU092...    33   6.7  

>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 41.1 bits (92), Expect = 0.025
 Identities = 17/20 (85%), Positives = 17/20 (85%)
 Frame = +1

Query: 46  MGDGNHSPSGGPYARLPTSA 105
           MGDGNHSPSG PYA LPT A
Sbjct: 1   MGDGNHSPSGRPYASLPTRA 20


>UniRef50_Q22P58 Cluster: ABC transporter family protein; n=1;
           Tetrahymena thermophila SB210|Rep: ABC transporter
           family protein - Tetrahymena thermophila SB210
          Length = 1448

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 16/74 (21%), Positives = 42/74 (56%)
 Frame = -1

Query: 449 QEHFFSTQHSINCDKL*YTFSLIRNDDEKHPSHRKVSNSVIKLLIIKNQKSTQNNAYLVM 270
           Q+  F+ Q ++    L +T+    ND+ +  +   ++ +V+++ +IKN+K+  N++ L +
Sbjct: 441 QKREFNNQIAVQIYPLSFTYGC-NNDEREQTNKNDLNQNVLEMQLIKNEKTNSNDSGLFV 499

Query: 269 NDIIFVNKNRFLIN 228
            ++  +  N+  +N
Sbjct: 500 LNVPLITINKGTLN 513


>UniRef50_Q7S1M5 Cluster: Putative uncharacterized protein
           NCU09282.1; n=1; Neurospora crassa|Rep: Putative
           uncharacterized protein NCU09282.1 - Neurospora crassa
          Length = 741

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -1

Query: 170 VLWVLETDIRSYIRLNIHIILIALVGRRAYGPPDGEWL 57
           +L +  TD R Y+  +I I+ +A VGRR   P D +WL
Sbjct: 633 LLSMKRTDSREYMGSDIKILRMARVGRRMPAPDDKKWL 670


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,742,333
Number of Sequences: 1657284
Number of extensions: 13381082
Number of successful extensions: 26480
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26468
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)