Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0352
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_53870| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 177 IPCVMGTRD*HPFLYTFKYTHNSYCTC 97
           +PC MG    +   +    TH+SYC C
Sbjct: 87  LPCTMGNHHNYCICHALWETHHSYCIC 113


>SB_53870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 374 DDEKHPSHRKVSNSVIKLLIIKNQKSTQNNAYLVMNDIIFV 252
           D E +PS+R ++N       ++   + Q   YL+ ND++ +
Sbjct: 341 DREAYPSYRPITNVAFPPKTLERVAANQTMNYLIPNDLMLI 381


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,523,922
Number of Sequences: 59808
Number of extensions: 416491
Number of successful extensions: 695
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)