Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0351
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.0  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    27   2.0  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   6.0  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    25   7.9  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    25   7.9  

>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 430 RNHTFLPVSFTS*LIRIIKHTLTIMATST 344
           RN   LP+ F   LI I++H  TI+  S+
Sbjct: 11  RNWVLLPIMFVMILIGILRHNATILLQSS 39


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
 Frame = +3

Query: 273 HTMFFFFIYLIMSICI--IPLCLLFIV 347
           +T+FFF++ ++MSI I  +P   LFIV
Sbjct: 256 NTLFFFYLPIVMSILIFCLPTQALFIV 282


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 212 ALQDYFNVLIIILCFFYFLCSYNVFFFYIPYYVDLYNSPLSLI 340
           A  D+     +IL FF +L  Y +FF      VD+  + L+L+
Sbjct: 553 ACVDFLLAAEVILRFFAYLPDYRLFFRRYTNLVDIVLAVLNLV 595


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -1

Query: 566 HFEYVIWRYHEIETDPKKKLHRQ*PRVSINKMVPKENYSTKKKSLKKS 423
           H  YV  R H    + +K+LH+   ++ ++ +  K+ Y      LKK+
Sbjct: 329 HSAYVGSRLHIWSEEGRKRLHKLLAKMGLSLVECKQTYIHMNMDLKKT 376


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +2

Query: 242 IILCFFYFLCSYNVFFFYIPYYVDLY---NSPLSLIYCRRCHNC*CMFYDT 385
           ++ C  +F  +Y +F +Y+P Y       N  +S ++   C    C F  T
Sbjct: 361 LLACSSFFYLNYMLFAYYVPQYFQRIRGDNPIMSGVHTIPCAAVLCFFCTT 411


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,725
Number of Sequences: 5004
Number of extensions: 47842
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)