Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0351
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999...    28   6.2  
02_05_0007 + 24918163-24918420,24919360-24919410,24919411-249194...    28   6.2  

>12_02_0800 + 23299674-23299678,23299714-23299791,23299876-23299920,
            23300052-23300415,23300493-23300574,23300793-23300873,
            23300974-23302106,23302202-23302350,23302426-23302516,
            23303628-23305940
          Length = 1446

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -2

Query: 541  ITKSKRIQKKNFTGNNLESQLTKWSLKKIIPQKKKV*RN 425
            +TK+KR + + +    L  +L + +L++I+P +K    N
Sbjct: 1049 VTKTKRAEMERYVPKPLSKELQQQNLRQILPSEKSCEEN 1087


>02_05_0007 +
           24918163-24918420,24919360-24919410,24919411-24919480,
           24919645-24919830,24920127-24920275,24921310-24921417,
           24921501-24921638,24922574-24922853,24922924-24923047,
           24923197-24923312,24923612-24923619
          Length = 495

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 185 FFSTEHANVALQDYFNVLIIILCFFYFLCSYNVFFFYIPYYV 310
           F S   A++ L  YF  + +++CF   L S    F  IP  V
Sbjct: 319 FQSHNGAHLKLPSYFGAITVLVCFISALISLAFAFIIIPRQV 360


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,871,779
Number of Sequences: 37544
Number of extensions: 242233
Number of successful extensions: 486
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)