Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0351
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)               31   0.68 
SB_33848| Best HMM Match : RasGEF_N (HMM E-Value=2.3e-13)              31   1.2  
SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2)                    31   1.2  
SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)                      29   4.8  
SB_32223| Best HMM Match : SH3BP5 (HMM E-Value=0.12)                   28   8.4  

>SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)
          Length = 1084

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +3

Query: 282 FFFFIYLIMSICIIPLCLLFIVDVAIIVSVCFMIRI 389
           FFFFI +I+ I II + ++ I+ + II+ +  +I I
Sbjct: 880 FFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 915


>SB_33848| Best HMM Match : RasGEF_N (HMM E-Value=2.3e-13)
          Length = 899

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -1

Query: 563 FEYVIWRYHEIETDPKKKLHRQ*PRVSINKMVPKENYSTKKKSLKKSHFPSRLLH 399
           FE+     HE +    + +H+Q P++S   +  K + S  +  ++ +  P R LH
Sbjct: 413 FEFPANSCHESDRRNSRSIHQQKPKLSFPYVCDKRSVSFSEHGIRPNPHPQRYLH 467


>SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2)
          Length = 379

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -3

Query: 567 SFRIRNLALSRNRNGSKKKTSPAIT*SLN*QNGP*RKL 454
           SFR+R   LSR R  S+K+ +P +T   + Q G  R+L
Sbjct: 340 SFRLRPATLSRTRASSRKRPAPLMTAIFSSQGGRLREL 377


>SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)
          Length = 708

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +3

Query: 288 FFIYLIMSICIIPLCLLFIVDVAIIVSVCFMIRI 389
           FF Y  +S+C+I L ++ I+ + II+ +  M+ I
Sbjct: 522 FFAYHPVSLCMIVLNIIIIIIMLIIIIIIIMLTI 555


>SB_32223| Best HMM Match : SH3BP5 (HMM E-Value=0.12)
          Length = 709

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 518 KKKLHRQ*PRVSINKMVPKENYSTKKKSLKKSHF 417
           +K+LHR   R  INK +  EN   K  ++ KS +
Sbjct: 179 EKRLHRDDLRALINKRIGLENLLEKVSNISKSEY 212


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,158,621
Number of Sequences: 59808
Number of extensions: 317602
Number of successful extensions: 893
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)