Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0351
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70780-1|CAA94819.1|  336|Caenorhabditis elegans Hypothetical pr...    34   0.11 
Z78410-2|CAB01636.2|  327|Caenorhabditis elegans Hypothetical pr...    31   0.80 
U40061-1|AAA81148.2|  573|Caenorhabditis elegans Hypothetical pr...    29   3.2  
CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical ...    29   3.2  
U23171-1|AAC46702.2|  334|Caenorhabditis elegans Serpentine rece...    28   5.6  
U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine rece...    28   7.4  
Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL031632-4|CAA21007.1|  451|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z70780-1|CAA94819.1|  336|Caenorhabditis elegans Hypothetical
           protein F46B6.2 protein.
          Length = 336

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
 Frame = +2

Query: 170 CLVYIFFSTEHANVALQDY-----FNVLIIILCFFYFLCSYNVFFFYIPYYVDLYNSPLS 334
           C +  F+S     + L  Y      ++ III+ FF+       FF Y+P  + +++    
Sbjct: 163 CTLLTFYSATETKIRLYSYHYQVVISIFIIIVSFFHLRYCCTFFFLYLPLAIGMFSLLQG 222

Query: 335 LIYCR-RCH 358
           ++  R +CH
Sbjct: 223 IVSWRTKCH 231


>Z78410-2|CAB01636.2|  327|Caenorhabditis elegans Hypothetical
           protein C51E3.2 protein.
          Length = 327

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = +2

Query: 221 DYFNVLIIILCFFYFLCSY-----NVFFFYIPYYVDLYNSPLSLIYCRRC 355
           DY + LI+ L FF+F CS      NV           + SP  L+ C  C
Sbjct: 3   DYIDPLILPLGFFFFFCSVIGVIGNVIMVICTIRTKRFRSPCHLLICATC 52


>U40061-1|AAA81148.2|  573|Caenorhabditis elegans Hypothetical
           protein ZK563.2 protein.
          Length = 573

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/50 (22%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +3

Query: 267 YVHTMFFFFIYLIMSICIIP---LCLLFIVDVAIIVSVCFMIRISHDVKE 407
           ++ T+F    + I+ + ++P   + ++FI+ + I ++ CF+  + +  KE
Sbjct: 448 FISTVFLIIPFTIIGLTLLPDNVIVIVFIIILIIAITCCFICVLQNSCKE 497


>CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical
           protein C42C1.1 protein.
          Length = 347

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 205 KCCTAGLFQCSNNYFVLFLFSMFIQCFFFLYTLLC 309
           K C A  +Q S+N    F F  F    FF +T+LC
Sbjct: 201 KYCLAERYQISDNIHFYFFFIRFASSIFF-FTILC 234


>U23171-1|AAC46702.2|  334|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 55 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +2

Query: 179 YIFFSTEHANVALQDYFNVLIIILCFFYFLCSYNVFFFYIPYYVDLYNSPLSLIYCRR 352
           YIF       + L ++  +L I++CF  F+  +  F+F +PY   L    L L  CR+
Sbjct: 259 YIFSQMTSVELLLNEH--LLGILICFPSFVDPFISFYFIVPYRQAL----LGLFKCRK 310


>U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 2 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 173 LVYIFFSTEHANVALQDYFNVLIIILCFFYF-LCSYNVFFFYIPYYVDLYNSPLS 334
           ++YI    +H N+ L+  F +L I+ C   F L   ++FF  +  Y+  +  P+S
Sbjct: 51  ILYILL-WKHRNLYLKQSFYILFIMSCIACFTLVVQDIFFARVFQYMTQFCEPMS 104


>Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical
           protein C32H11.2 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +2

Query: 167 RCLVYIFFSTEHANVALQDYFNVLIIILCFFYFLCSYNVFFFYIPYYVDLYNSPLSLIYC 346
           +C VY F STE     +   F   + ILC F+   S +V  F I Y +   +   S IYC
Sbjct: 131 KCFVYFFPSTERTIFPILGRFYKRVWILCLFF--ASKDV-MFGISYLIFSCHENCS-IYC 186


>AL031632-4|CAA21007.1|  451|Caenorhabditis elegans Hypothetical
           protein Y32B12B.5 protein.
          Length = 451

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +2

Query: 233 VLIIILCFFYFL-CSYNVFFF 292
           V+II++CF   L CS N++FF
Sbjct: 330 VMIIVVCFTTILFCSLNIYFF 350


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,349,824
Number of Sequences: 27780
Number of extensions: 268349
Number of successful extensions: 982
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)