Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0350
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    69   8e-13
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          28   1.1  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 68.5 bits (160), Expect = 8e-13
 Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
 Frame = +1

Query: 304 LSPNIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRL 477
           LSP  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L
Sbjct: 116 LSPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGL 175

Query: 478 FLTILLGFYFIFYKHMNI*KLLLQLLIEFMGSTFFIATGI 597
           ++TI L F F+  +          +     G++F+ ATG+
Sbjct: 176 YMTIALSFLFLGGQAYEYWNAPFTISDSVYGASFYFATGL 215



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 164 RDISREGTYQGKHTILVNKGLR*G 235
           RD+S E    G HT  V KGL+ G
Sbjct: 69  RDMSTEANIHGAHTKAVTKGLKIG 92



 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 593 GFHGIHVIIGNFISINLLYSTF 658
           G HGIH+I+G  + +   Y+ +
Sbjct: 214 GLHGIHIIVGTILLLVATYNIY 235


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -2

Query: 581 KKVDPINSISNCKRSFYIF 525
           KK++P NS+S+C R+ ++F
Sbjct: 215 KKIEPSNSLSSCLRNSFVF 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,087
Number of Sequences: 5004
Number of extensions: 35409
Number of successful extensions: 79
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)