Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0349
(684 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P03736 Cluster: Minor tail protein H [Contains: Minor t... 175 6e-43
UniRef50_O64330 Cluster: Gp16; n=3; root|Rep: Gp16 - Bacteriopha... 62 9e-09
UniRef50_Q03627 Cluster: A13 antigen; n=1; Trypanosoma cruzi|Rep... 59 1e-07
UniRef50_Q45Q07 Cluster: JK_10P; n=1; Enterobacteria phage JK06|... 56 8e-07
UniRef50_A5PJ03 Cluster: TtpM; n=2; T1-like viruses|Rep: TtpM - ... 54 2e-06
UniRef50_Q8ZQG3 Cluster: Putative Fels-1 prophage minor tail pro... 52 1e-05
UniRef50_A4TJE9 Cluster: Phage tail protein; n=8; Yersinia|Rep: ... 50 5e-05
UniRef50_Q8ZN07 Cluster: Gifsy-1 prophage protein; n=18; Enterob... 41 0.024
UniRef50_A4WSA4 Cluster: Putative uncharacterized protein; n=2; ... 39 0.13
UniRef50_Q3J3X6 Cluster: Putative uncharacterized protein; n=1; ... 38 0.23
UniRef50_A1KTG4 Cluster: Putative prophage-related protein; n=1;... 36 0.92
UniRef50_UPI000051A267 Cluster: PREDICTED: similar to katanin p8... 36 1.2
UniRef50_Q23QC2 Cluster: Putative uncharacterized protein; n=1; ... 35 1.6
UniRef50_A1HL21 Cluster: Putative uncharacterized protein precur... 35 2.1
UniRef50_A0V4A7 Cluster: Putative uncharacterized protein; n=1; ... 35 2.1
UniRef50_A3WZV6 Cluster: Putative uncharacterized protein; n=1; ... 34 2.8
UniRef50_Q6LBC9 Cluster: Probable exonuclease; n=1; Oligotropha ... 34 3.7
UniRef50_Q1IZ44 Cluster: AlgP-related protein precursor; n=1; De... 34 3.7
UniRef50_O76745 Cluster: Salivary nitrophorin; n=1; Cimex lectul... 34 3.7
UniRef50_O84419 Cluster: Probable outer membrane protein pmpC pr... 34 3.7
UniRef50_Q4T403 Cluster: Chromosome 2 SCAF9866, whole genome sho... 33 4.9
UniRef50_A0RYZ4 Cluster: Lhr-like helicase; n=1; Cenarchaeum sym... 33 4.9
UniRef50_Q89ZM4 Cluster: Valyl-tRNA synthetase; n=26; cellular o... 33 4.9
UniRef50_Q60988 Cluster: SCL-interrupting locus protein homolog;... 33 4.9
UniRef50_UPI0000DD7C11 Cluster: PREDICTED: hypothetical protein;... 33 6.5
UniRef50_A3HNI0 Cluster: Phage tail tape measure protein, lambda... 33 6.5
UniRef50_Q6N332 Cluster: Transcriptional regulator, Crp/Fnr fami... 33 8.6
UniRef50_A4N170 Cluster: Putative uncharacterized protein; n=1; ... 33 8.6
UniRef50_Q4QH07 Cluster: Putative uncharacterized protein; n=3; ... 33 8.6
>UniRef50_P03736 Cluster: Minor tail protein H [Contains: Minor tail
protein H*]; n=43; root|Rep: Minor tail protein H
[Contains: Minor tail protein H*] - Bacteriophage lambda
Length = 853
Score = 175 bits (427), Expect = 6e-43
Identities = 83/84 (98%), Positives = 83/84 (98%)
Frame = -3
Query: 253 VFTKEATSRIGVGNLYRLMRGYATGGYVGTPGSMADSRXQASGTFEQNNHVVINNDGTNG 74
VFTKEATSRIGVGNLYRLMRGYATGGYVGTPGSMADSR QASGTFEQNNHVVINNDGTNG
Sbjct: 757 VFTKEATSRIGVGNLYRLMRGYATGGYVGTPGSMADSRSQASGTFEQNNHVVINNDGTNG 816
Query: 73 QIGPAALKAVYDMARKGARDEIQT 2
QIGPAALKAVYDMARKGARDEIQT
Sbjct: 817 QIGPAALKAVYDMARKGARDEIQT 840
Score = 88.2 bits (209), Expect = 2e-16
Identities = 43/59 (72%), Positives = 45/59 (76%)
Frame = -2
Query: 683 SEQKKTWAAEDHFAGNWMAA*SPAGVSGKRAPTDSMSQVKSAATQTFDGIAQNMAAMLT 507
SEQKKTWAAED GNWMA + + TDSMSQVKSAATQTFDGIAQNMAAMLT
Sbjct: 613 SEQKKTWAAEDQLRGNWMAGLKSGWSEWEESATDSMSQVKSAATQTFDGIAQNMAAMLT 671
Score = 84.2 bits (199), Expect = 3e-15
Identities = 54/131 (41%), Positives = 55/131 (41%)
Frame = -1
Query: 648 LRGKLDGSLKSGWSEWEESAHGQYVAGKKCSHADL*WYCTEYGGDADGSEQNWRSFTRSV 469
LRG LKSGWSEWEESA K + GSEQNWRSFTRSV
Sbjct: 625 LRGNWMAGLKSGWSEWEESATDSMSQVKSAATQTFDGIAQNMAAMLTGSEQNWRSFTRSV 684
Query: 468 LSMMTEILLKQAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK 289
LSMMTEILLKQAM K
Sbjct: 685 LSMMTEILLKQAMVGIVGSIGSAIGGAVGGGASASGGTAIQAAAAKFHFATGGFTGTGGK 744
Query: 288 YEPAGIVHRGE 256
YEPAGIVHRGE
Sbjct: 745 YEPAGIVHRGE 755
>UniRef50_O64330 Cluster: Gp16; n=3; root|Rep: Gp16 - Bacteriophage
N15
Length = 838
Score = 62.5 bits (145), Expect = 9e-09
Identities = 27/33 (81%), Positives = 31/33 (93%)
Frame = -3
Query: 253 VFTKEATSRIGVGNLYRLMRGYATGGYVGTPGS 155
VFTKEAT+RIGVGNLYR+M+GYATGGYVG G+
Sbjct: 740 VFTKEATNRIGVGNLYRMMKGYATGGYVGGGGT 772
Score = 44.8 bits (101), Expect = 0.002
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = -2
Query: 665 WAAEDHFAGNWMAA*SPAGVSGKRAPTDSMSQVKSAATQTFDGIAQNMAAMLT 507
+A +D +W + A + +D+ Q+KS AT TFDGI QNMA MLT
Sbjct: 625 YAEQDKLRDDWQSGAKSAWADYVDSASDAYGQMKSFATSTFDGIGQNMADMLT 677
Score = 44.4 bits (100), Expect = 0.003
Identities = 25/73 (34%), Positives = 35/73 (47%)
Frame = -1
Query: 648 LRGKLDGSLKSGWSEWEESAHGQYVAGKKCSHADL*WYCTEYGGDADGSEQNWRSFTRSV 469
LR KS W+++ +SA Y K + + + +W FTRS
Sbjct: 631 LRDDWQSGAKSAWADYVDSASDAYGQMKSFATSTFDGIGQNMADMLTRGKADWADFTRST 690
Query: 468 LSMMTEILLKQAM 430
LSM+T+ILLKQAM
Sbjct: 691 LSMLTQILLKQAM 703
>UniRef50_Q03627 Cluster: A13 antigen; n=1; Trypanosoma cruzi|Rep:
A13 antigen - Trypanosoma cruzi
Length = 251
Score = 58.8 bits (136), Expect = 1e-07
Identities = 33/65 (50%), Positives = 39/65 (60%)
Frame = -3
Query: 253 VFTKEATSRIGVGNLYRLMRGYATGGYVGTPGSMADSRXQASGTFEQNNHVVINNDGTNG 74
VFTKE+TSRIGV NLYRLMRGYA+GG VG +R G V I+ G++G
Sbjct: 3 VFTKESTSRIGVANLYRLMRGYASGGLVG-----GGNRAAGMGGISVYAPVSISQQGSDG 57
Query: 73 QIGPA 59
I A
Sbjct: 58 SINQA 62
>UniRef50_Q45Q07 Cluster: JK_10P; n=1; Enterobacteria phage
JK06|Rep: JK_10P - Enterobacteria phage JK06
Length = 630
Score = 56.0 bits (129), Expect = 8e-07
Identities = 27/33 (81%), Positives = 28/33 (84%), Gaps = 1/33 (3%)
Frame = -3
Query: 253 VFTKEATSRIGVGNLYRLMRGYATGGYVGT-PG 158
VFTKEATSRIGV NLY+LMRGYA GG VG PG
Sbjct: 532 VFTKEATSRIGVDNLYKLMRGYANGGVVGAGPG 564
>UniRef50_A5PJ03 Cluster: TtpM; n=2; T1-like viruses|Rep: TtpM - Phage
TLS
Length = 945
Score = 54.4 bits (125), Expect = 2e-06
Identities = 30/62 (48%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = -3
Query: 253 VFTKEATSRIGVGNLYRLMRGYATGGYVG--TPGSMADSRXQASGTFEQNNHVVINNDGT 80
VFTKEAT RIG NLYR+MRGYA GG VG T G +R + F N + N
Sbjct: 853 VFTKEATQRIGAKNLYRMMRGYANGGQVGSVTTGGAGINRGASQFAFGDINVNIDNGQDP 912
Query: 79 NG 74
G
Sbjct: 913 KG 914
>UniRef50_Q8ZQG3 Cluster: Putative Fels-1 prophage minor tail protein;
n=1; Salmonella typhimurium|Rep: Putative Fels-1 prophage
minor tail protein - Salmonella typhimurium
Length = 1053
Score = 52.0 bits (119), Expect = 1e-05
Identities = 23/38 (60%), Positives = 25/38 (65%)
Frame = -3
Query: 121 FEQNNHVVINNDGTNGQIGPAALKAVYDMARKGARDEI 8
F H+ INND NGQIGP ALK VYD+ RK A D I
Sbjct: 1001 FAPQYHIAINNDAGNGQIGPGALKVVYDLGRKAAADFI 1038
>UniRef50_A4TJE9 Cluster: Phage tail protein; n=8; Yersinia|Rep: Phage
tail protein - Yersinia pestis (strain Pestoides F)
Length = 1171
Score = 50.0 bits (114), Expect = 5e-05
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = -3
Query: 253 VFTKEATSRIGVGNLYRLMRGYATGGYV 170
VFTKEAT+RIG+ NLY++MRGYA GG V
Sbjct: 1061 VFTKEATNRIGIDNLYKMMRGYADGGVV 1088
>UniRef50_Q8ZN07 Cluster: Gifsy-1 prophage protein; n=18;
Enterobacteriaceae|Rep: Gifsy-1 prophage protein -
Salmonella typhimurium
Length = 1031
Score = 41.1 bits (92), Expect = 0.024
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -3
Query: 121 FEQNNHVVINNDGTNGQIGPAALKAVYDMARKGARD 14
F ++ I+ND NGQIGP AL+AVY++ +K A D
Sbjct: 980 FAPEYNIEIHNDAGNGQIGPQALQAVYNIGKKAAID 1015
>UniRef50_A4WSA4 Cluster: Putative uncharacterized protein; n=2;
Rhodobacter sphaeroides|Rep: Putative uncharacterized
protein - Rhodobacter sphaeroides ATCC 17025
Length = 794
Score = 38.7 bits (86), Expect = 0.13
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Frame = -3
Query: 253 VFTKEATSRIGVGN---LYRLMRGYATGGYVGTPGSMADS 143
VF+K ATSRIGV N L+R +GYA+GG+V + A S
Sbjct: 685 VFSKRATSRIGVANLEALHRSAKGYASGGHVAPARAPAAS 724
>UniRef50_Q3J3X6 Cluster: Putative uncharacterized protein; n=1;
Rhodobacter sphaeroides 2.4.1|Rep: Putative
uncharacterized protein - Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM158)
Length = 669
Score = 37.9 bits (84), Expect = 0.23
Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 3/31 (9%)
Frame = -3
Query: 253 VFTKEATSRIGVGNL---YRLMRGYATGGYV 170
VF+KEAT++IG GNL +R ++GYA GG V
Sbjct: 560 VFSKEATAKIGAGNLDRMHRHLKGYAAGGLV 590
>UniRef50_A1KTG4 Cluster: Putative prophage-related protein; n=1;
Neisseria meningitidis FAM18|Rep: Putative
prophage-related protein - Neisseria meningitidis
serogroup C / serotype 2a (strain ATCC 700532 /FAM18)
Length = 1072
Score = 35.9 bits (79), Expect = 0.92
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = -3
Query: 256 VVFT-KEATSRIGVGNLYRL-MRGYATGGYVGTPGSMADSRXQASGTFEQNNHVVINNDG 83
VVF+ ++ + GV + RL + GYA GG VG P + R +G+ + N + IN DG
Sbjct: 974 VVFSQRDVRNHGGVAAVERLRLNGYAGGGAVGLPSVLTGVRSAGAGSMQVN--ITINRDG 1031
Query: 82 T 80
+
Sbjct: 1032 S 1032
>UniRef50_UPI000051A267 Cluster: PREDICTED: similar to katanin p80
(WD40-containing) subunit B 1; n=1; Apis mellifera|Rep:
PREDICTED: similar to katanin p80 (WD40-containing)
subunit B 1 - Apis mellifera
Length = 873
Score = 35.5 bits (78), Expect = 1.2
Identities = 24/88 (27%), Positives = 37/88 (42%)
Frame = +1
Query: 406 ADTPDNPHHCLLKQNFCHHGQHGTGEAAPVLLTAVSIAAIFCAIPSKVCVAALFTCDILS 585
A +PD+P H L +QN C G+ G PV + ++ + A+ + T +
Sbjct: 549 APSPDSPKHYLKRQNSCRDGEQGYESDYPVQINSIRHSPSDPALNRPNTAQSRSTSLNRN 608
Query: 586 VGALFPLTPAGLQAAIQFPAKWSSAAQV 669
L+ A F AK S+ AQV
Sbjct: 609 FATSMSLSARNASTATTFAAKKSNKAQV 636
>UniRef50_Q23QC2 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 787
Score = 35.1 bits (77), Expect = 1.6
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 58 QPDLSARSCRRC*SPHGYSAQTSRTPATGCLPCCPVYR 171
QPD+SA+ C C S+Q ++ P TGCL CP Y+
Sbjct: 45 QPDISAQRCSFCQLFEYTSSQNTQNPYTGCL-TCPDYQ 81
>UniRef50_A1HL21 Cluster: Putative uncharacterized protein
precursor; n=1; Ralstonia pickettii 12J|Rep: Putative
uncharacterized protein precursor - Ralstonia pickettii
12J
Length = 869
Score = 34.7 bits (76), Expect = 2.1
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = +1
Query: 370 GCAATNSPANGAADTPDNPHHCLLKQNFCHHGQHGTGEAAPVLLTAVSIAAIFCAIPSKV 549
G AAT + + A T C+ + + A S +A FC +PS +
Sbjct: 705 GLAATRAATDTAGTTLACAPACVRNASTAWRSALACSCSDIAAAAACSTSAAFCCVPSSI 764
Query: 550 CVAALFTCDI 579
CV A TC I
Sbjct: 765 CVTAWLTCSI 774
>UniRef50_A0V4A7 Cluster: Putative uncharacterized protein; n=1;
Delftia acidovorans SPH-1|Rep: Putative uncharacterized
protein - Delftia acidovorans SPH-1
Length = 446
Score = 34.7 bits (76), Expect = 2.1
Identities = 25/66 (37%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Frame = +2
Query: 122 RPGRLXPAVCHAARCTDITAGGIAAHQPVKIPHANPAGCLLREDNSP-R*TIPAGSYLPP 298
RP PA A G A P P A PAGC R P R P LPP
Sbjct: 331 RPPAGGPANARACSPGHPATNGHAGPAPEAAPAAGPAGCRRRPIRWPARRRHPGHRPLPP 390
Query: 299 VPVNPP 316
VP PP
Sbjct: 391 VPGRPP 396
>UniRef50_A3WZV6 Cluster: Putative uncharacterized protein; n=1;
Nitrobacter sp. Nb-311A|Rep: Putative uncharacterized
protein - Nitrobacter sp. Nb-311A
Length = 712
Score = 34.3 bits (75), Expect = 2.8
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = -3
Query: 253 VFTKEATSRIGVGNLYRLMRGYATGGYVGTPGSMADSRXQA 131
VF E+ IGV L RL + +A GG V P MA R A
Sbjct: 612 VFDAESVRAIGVDKLERLRKSFANGGAVDIPTVMAGGRSSA 652
>UniRef50_Q6LBC9 Cluster: Probable exonuclease; n=1; Oligotropha
carboxidovorans|Rep: Probable exonuclease - Oligotropha
carboxidovorans (Pseudomonas carboxydovorans)
Length = 103
Score = 33.9 bits (74), Expect = 3.7
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Frame = +3
Query: 360 RLTRMRRHQQPRQWR-------CRYSRQSPPLPA*AEFLSSWTARNG*SCASSAHCRQ 512
RL R RR Q+ R R R+SR S P + +SSW +G S ASS H R+
Sbjct: 26 RLARSRRAQRARNVRTCTTLLPARFSRYSGPASTLSSDISSWLIHDGSSSASSPHGRR 83
>UniRef50_Q1IZ44 Cluster: AlgP-related protein precursor; n=1;
Deinococcus geothermalis DSM 11300|Rep: AlgP-related
protein precursor - Deinococcus geothermalis (strain DSM
11300)
Length = 375
Score = 33.9 bits (74), Expect = 3.7
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 330 ISPQRPEWLYRLTRMRRHQQPRQWRCRYSRQSPPLPA*AEFLSSWTA 470
+SP+ WL+R+ R R+ W R +PP PA A + TA
Sbjct: 276 VSPEAANWLHRVGRSARNLVGSMWLERMEEPAPPAPAPARGTQAGTA 322
>UniRef50_O76745 Cluster: Salivary nitrophorin; n=1; Cimex
lectularius|Rep: Salivary nitrophorin - Cimex
lectularius (Bed bug)
Length = 302
Score = 33.9 bits (74), Expect = 3.7
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 231 AGLAWGIFTG*CAA-MPPAVMSVHRAAWQTAGXRRPGRLSRI 109
AG A G CAA PPA +SVH +W + R P L +
Sbjct: 7 AGAALAFVLGLCAAGSPPAQLSVHTVSWNSGHERAPTNLEEL 48
>UniRef50_O84419 Cluster: Probable outer membrane protein pmpC
precursor; n=16; Chlamydia trachomatis|Rep: Probable
outer membrane protein pmpC precursor - Chlamydia
trachomatis
Length = 1770
Score = 33.9 bits (74), Expect = 3.7
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 184 TGGYVGTPGSMADSRXQASGTFEQNNHVVIN-NDGTNGQIGPAALKA 47
TGG GTP + ++S + T EQNN+ N + NG PA A
Sbjct: 1278 TGGSGGTPSTDSESNQNSDDTEEQNNNDASNQGESANGSSSPAVAAA 1324
>UniRef50_Q4T403 Cluster: Chromosome 2 SCAF9866, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 2
SCAF9866, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 260
Score = 33.5 bits (73), Expect = 4.9
Identities = 18/55 (32%), Positives = 21/55 (38%)
Frame = +1
Query: 370 GCAATNSPANGAADTPDNPHHCLLKQNFCHHGQHGTGEAAPVLLTAVSIAAIFCA 534
G A +P A P PH L QN G E P + T V+ A CA
Sbjct: 19 GATAGGAPGPSVAAVPGGPHPARLHQNPAPGPDRGPEERTPTVTTVVAAAIRLCA 73
>UniRef50_A0RYZ4 Cluster: Lhr-like helicase; n=1; Cenarchaeum
symbiosum|Rep: Lhr-like helicase - Cenarchaeum symbiosum
Length = 912
Score = 33.5 bits (73), Expect = 4.9
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -2
Query: 290 NMSQRGLFTVVSCLHEGG-NQPDWRGESLPADARLCHRRLCRYTGQHGRQPVAGVRDV*A 114
N+ ++ LF V L GG N P W GE++P D R ++ R+ + R + DV A
Sbjct: 512 NIDEKSLFVNVEPLMSGGVNVPYWEGETIPVD-RSTSGKVGRFRARARRGEIQLASDVMA 570
Query: 113 E*P 105
+ P
Sbjct: 571 KLP 573
>UniRef50_Q89ZM4 Cluster: Valyl-tRNA synthetase; n=26; cellular
organisms|Rep: Valyl-tRNA synthetase - Bacteroides
thetaiotaomicron
Length = 879
Score = 33.5 bits (73), Expect = 4.9
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -2
Query: 449 FCLSRQ-WWGLS-GVSAAPLAGLLVAAHPRQAVQPFRPLRRNSILQPEDLRE 300
+C+SRQ WWG P G +VAA P +A+ + N+ L +DLR+
Sbjct: 401 WCISRQLWWGHRIPAYFLPEGGYVVAATPEEALAKAKEKTGNAALTMDDLRQ 452
>UniRef50_Q60988 Cluster: SCL-interrupting locus protein homolog;
n=10; Theria|Rep: SCL-interrupting locus protein homolog
- Mus musculus (Mouse)
Length = 1262
Score = 33.5 bits (73), Expect = 4.9
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 504 CRQHRRHILCNTIKGLRGCTFYLRHTVRGRSLPTHS-SRTSGCHPVSREVVFS 659
C QH HI +TI +G T +R SLP H+ +SGC + ++S
Sbjct: 588 CCQHHGHIQYSTINSWQGNTVGSIQDLRSESLPKHAFFHSSGCPSLCPNAIYS 640
>UniRef50_UPI0000DD7C11 Cluster: PREDICTED: hypothetical protein;
n=1; Homo sapiens|Rep: PREDICTED: hypothetical protein -
Homo sapiens
Length = 284
Score = 33.1 bits (72), Expect = 6.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 15 SRAPLRAMSYTAFRAAGPICPFVPSLLITTWLFCS 119
S AP+ ++ + FR AGP P +P TW CS
Sbjct: 157 SSAPVASLQWACFRWAGPASPNLPPAAWRTWTQCS 191
>UniRef50_A3HNI0 Cluster: Phage tail tape measure protein, lambda
family; n=1; Pseudomonas putida GB-1|Rep: Phage tail tape
measure protein, lambda family - Pseudomonas putida
(strain GB-1)
Length = 908
Score = 33.1 bits (72), Expect = 6.5
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Frame = -3
Query: 253 VFTKEATSRIGVGNLYRLM--RGYATGGYV-----GTPGSMADSRXQASGTFEQNNHVVI 95
V KE ++ G+ N + RGYA+GG+V T MA S+ +AS + ++
Sbjct: 802 VLRKEVVAQPGMRNYLEGLNVRGYASGGFVTPRIASTATQMAASQPEASTSAAPG---IV 858
Query: 94 NNDGTNGQIGPAALKAVYDMARKGARD 14
+ G A L + A+KGA+D
Sbjct: 859 QHISVQGTADDATLARIQQAAQKGAQD 885
>UniRef50_Q6N332 Cluster: Transcriptional regulator, Crp/Fnr family;
n=10; Bradyrhizobiaceae|Rep: Transcriptional regulator,
Crp/Fnr family - Rhodopseudomonas palustris
Length = 250
Score = 32.7 bits (71), Expect = 8.6
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 549 LRGCTFYLRHTVRGRSLPTHSSRTSGCHPVSREVVFSRPGLFL 677
+RG +R+++RGR THS +G H SREV F P +FL
Sbjct: 2 MRGRNPGVRNSLRGRIRLTHSFSFAGYHVTSREVPFD-PKVFL 43
>UniRef50_A4N170 Cluster: Putative uncharacterized protein; n=1;
Haemophilus influenzae 22.1-21|Rep: Putative
uncharacterized protein - Haemophilus influenzae 22.1-21
Length = 267
Score = 32.7 bits (71), Expect = 8.6
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Frame = -3
Query: 253 VFTKEATSRIGVG-----NLYRLMRGYATGGYVGTP 161
V TKEAT+R+G G N + RG+A GG VG P
Sbjct: 163 VITKEATARLGRGFLDHLNYGSVRRGFANGGGVGVP 198
>UniRef50_Q4QH07 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 470
Score = 32.7 bits (71), Expect = 8.6
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 264 RGELSSRRRQPAGLAWGIFTG*CAAMPPAVMSVHRAAWQTAGXRRP 127
R E+ ++ A +A A PPA MS+H+A TA RRP
Sbjct: 151 RTEVGTKGAGAAAMAAACSPSPALASPPASMSIHKAVGATASARRP 196
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 768,817,864
Number of Sequences: 1657284
Number of extensions: 17582896
Number of successful extensions: 58513
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 54794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58461
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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