Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0349
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   2.3  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    23   3.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   3.1  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   4.1  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    22   4.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   5.4  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   7.1  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 639 KLDGSLKSGWSEWEESAHGQ 580
           K  GSL + WSE+ +   GQ
Sbjct: 225 KTSGSLYTCWSEFTQKTQGQ 244


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 366 TRMRRHQQPRQWRCRYSRQS 425
           T MR H   R +RCR  +++
Sbjct: 67  THMRTHSGERPYRCRLCKKA 86


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 366 TRMRRHQQPRQWRCRYSRQS 425
           T MR H   R +RCR  +++
Sbjct: 323 THMRTHSGERPYRCRLCKKA 342


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 634 GWQPEVRLE*VGRERPRTVCRR*KVQPRRP 545
           G  P  +     RERPR    + + +P+RP
Sbjct: 303 GQNPGEKTNIAPRERPRATDHQRRNEPKRP 332


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 257 SCLHEGGNQPDWRGESLPADARL 189
           S L+ G N+ DW+ ++  ADA +
Sbjct: 216 SPLYGGVNESDWQQQNRNADAAI 238


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +1

Query: 211 DSPRQSGWLPPS*RQLTTVNNPRWLIFAAGSRKSSGCKMEFRRS 342
           DS ++ G  P    +L  V   R   +   +    GCK  FRRS
Sbjct: 172 DSKKKKGPTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRS 215


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 440 SRQWWGLSGVSAAPLAGLLVA 378
           S Q WG+  +  APL   L+A
Sbjct: 375 SEQQWGILVLIIAPLIATLIA 395


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,034
Number of Sequences: 336
Number of extensions: 3823
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)