Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0349
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    31   0.20 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    29   0.63 
SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p...    28   1.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   4.4  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   4.4  
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo...    25   7.7  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    25   7.7  

>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 230 PDWRGESLPADARLCHRRLCRYTGQHGRQPV 138
           PDW G+++     LCH RL     + G QP+
Sbjct: 33  PDWSGKAIRNQTILCHERLAIVGVESGAQPL 63


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 443 LSRQWWGLSGVSAAPLAGLLVAAHPRQAVQPFRPL--RRNSILQPEDLREP 297
           L+  + G +GVSAA  A   +A HP  A +    +   RN I+   DLR+P
Sbjct: 199 LNLSYLGAAGVSAATGAVNSIAWHPNNATRLATAIDDNRNPIILTWDLRQP 249


>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 289

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 251 DNSPR*TIPAGSYLPPVPVNPPVAKW 328
           D S   TIP    L P PV+P V KW
Sbjct: 256 DPSVSSTIPPAQELAPAPVDPSVHKW 281


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 182  GGIAAHQPVKIPHANPAGCLLREDNSPR*TIPAGSYLPPVPVNPPV 319
            GG+A   PV  P   P      + ++P    P  S +PP P  PP+
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMS-VPPPPSAPPM 1723


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 278  RGLFTVVSCLH-EGGNQPDWRGESLPADARLCHRRLCRYTGQ 156
            +GLF+  S  H  GG    WR  ++ A + +C  R+  + GQ
Sbjct: 957  KGLFSKSSKEHFNGGKYITWRLFAVSAHSNVCAARIYEHMGQ 998


>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 639 KLDGSLKSGWSEWEESAHGQYVAGK 565
           KL+G     W EWE+ +   YVA +
Sbjct: 26  KLEGVSSPTWVEWEKKSKRLYVANE 50


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 453 LSSWTARNG*SCASSAH 503
           +++W A+NG SC   AH
Sbjct: 85  IATWNAQNGMSCVEKAH 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,487
Number of Sequences: 5004
Number of extensions: 61320
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)