Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0349
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0141 + 20162276-20162285,20162460-20162726,20162734-201628... 34 0.12
11_06_0264 - 21785450-21786928 31 0.85
04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402 30 2.0
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 30 2.0
02_05_0080 + 25665210-25665577,25665699-25666584 30 2.0
08_01_0576 - 5114636-5115151,5115254-5116183,5116898-5117614,511... 29 2.6
06_03_0395 - 20354713-20355570 29 2.6
06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760... 29 3.4
06_01_0943 + 7258740-7258809,7258883-7259100,7260023-7260558,726... 29 3.4
06_01_0942 - 7242389-7243160,7243293-7243822,7245878-7246095,724... 29 3.4
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412... 29 3.4
02_02_0285 + 8582033-8582201,8582375-8582652,8582762-8583394 29 4.5
07_03_1509 - 27246721-27247350 28 6.0
07_01_0753 - 5799733-5799741,5799938-5800642 28 6.0
05_06_0081 + 25423847-25424302 28 6.0
01_05_0738 + 24788278-24788521,24789192-24789510,24789888-247899... 28 6.0
05_07_0210 + 28427167-28427589 28 7.9
05_03_0608 + 16153992-16154960,16158959-16159168,16159252-161595... 28 7.9
04_04_0569 + 26293891-26294931 28 7.9
>02_04_0141 +
20162276-20162285,20162460-20162726,20162734-20162881,
20163025-20163091,20163878-20163955,20164034-20164039
Length = 191
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Frame = +2
Query: 173 ITAGGIAAHQPVKIPHANPAGCLLR-EDNSPR*TIPAG-----SYLPPVPVNPPVAKW 328
+ AGG + I GC LR PR PA YLPP P++PP KW
Sbjct: 39 VGAGGGSTQSEAAIAAPKDKGCGLRPRPPDPRALEPAAVSAWRHYLPPTPLSPPYGKW 96
>11_06_0264 - 21785450-21786928
Length = 492
Score = 31.1 bits (67), Expect = 0.85
Identities = 18/61 (29%), Positives = 21/61 (34%)
Frame = +1
Query: 52 SEQPDLSARSCRRC*SPHGYSAQTSRTPATGCLPCCPVYRHNRRWHSRASAGKDSPRQSG 231
S P AR+ SPH YS+ T P + R RRWH A
Sbjct: 305 SSSPSPVARTVLSSPSPHQYSSGPKPTQYLAVTPRGELLRVTRRWHQTAIVAPPDASNGR 364
Query: 232 W 234
W
Sbjct: 365 W 365
>04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402
Length = 566
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/86 (27%), Positives = 38/86 (44%)
Frame = +1
Query: 406 ADTPDNPHHCLLKQNFCHHGQHGTGEAAPVLLTAVSIAAIFCAIPSKVCVAALFTCDILS 585
AD P L FC++ +G P L + AA+F + +VC L T
Sbjct: 55 ADFPGGGEGFELVARFCYN--NGRVPLCPSNLPLLHCAAVFLEMTEEVCTCNLLTQAEAF 112
Query: 586 VGALFPLTPAGLQAAIQFPAKWSSAA 663
V L+ T A + AA++ +++AA
Sbjct: 113 VDGLYYWTWADVLAAVKSCEPFAAAA 138
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Frame = +2
Query: 140 PAVCHAARCTDITAGGIAAHQPVKIPHANPAGCLLREDNSPR*TIPAGS----YLPPVPV 307
P+V A + D G HQ +P PA CL +S T P + + PP P
Sbjct: 294 PSVAQAPQYADPIGVGAGGHQERAVPAKPPALCLAPNASSSLFTAPVPADRQQFAPPPPP 353
Query: 308 NP 313
+P
Sbjct: 354 SP 355
>02_05_0080 + 25665210-25665577,25665699-25666584
Length = 417
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 502 TAVSIAAIFCAIPSKVCVAALFTCDILSVGALFPLTPAG 618
TAV++ A A+ ++C L +CDI S A F AG
Sbjct: 234 TAVAVVADDDALVGEICPGVLGSCDIESASAAFAALSAG 272
>08_01_0576 -
5114636-5115151,5115254-5116183,5116898-5117614,
5119630-5119746,5119930-5120295,5121365-5121634
Length = 971
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +2
Query: 485 LRQFCSLPSASPPYSVQYHQRSAWLHFLPATY-CPWALSSHSLQ--PDFRLPSSFPRSGL 655
+R F S +PP ++ + Q + LP+++ P A+ + LQ P F LP S P SG
Sbjct: 702 IRSFAPSMSVAPPQNIFHGQGGSAAALLPSSFPVPPAVPPYGLQSMPGFPLP-SLP-SGP 759
Query: 656 QPP 664
PP
Sbjct: 760 PPP 762
>06_03_0395 - 20354713-20355570
Length = 285
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 82 CRRC*SPHGYSAQTSRTPATGCLPCCPVYRHNRRWHSRASAGKDSPRQSGWL-PPS 246
CRRC P A + P+T LPCC RH S A A +GWL PPS
Sbjct: 143 CRRCRGPSTAVATATGAPSTS-LPCC--CRHVVA-SSAAPATSWLDPAAGWLDPPS 194
>06_03_1190 -
28274801-28275163,28275662-28275853,28275965-28276088,
28276177-28276320,28276524-28276640,28277189-28277308,
28277433-28277521,28277609-28277685,28278250-28278322,
28278578-28279012,28280247-28280442,28281270-28281490,
28281591-28281703,28282552-28283146,28283236-28283418,
28283548-28283712,28283808-28284029
Length = 1142
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = -2
Query: 344 PLRRNSILQPEDLREPAANMSQRGLFTVVSCL 249
PLR S+L ED R P A+ S R L VV+CL
Sbjct: 666 PLR--SLLALEDPRSPTASASYRILVAVVACL 695
>06_01_0943 +
7258740-7258809,7258883-7259100,7260023-7260558,
7260915-7261698
Length = 535
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 472 GTGEAAPVLLTAVSIAAIFCAIP 540
G G A P + AVS+AA FC P
Sbjct: 199 GLGFAVPAAVMAVSVAAFFCCTP 221
>06_01_0942 -
7242389-7243160,7243293-7243822,7245878-7246095,
7246380-7246425
Length = 521
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 472 GTGEAAPVLLTAVSIAAIFCAIP 540
G G A P + AVS+AA FC P
Sbjct: 190 GIGFAVPAAVMAVSVAAFFCCTP 212
>01_01_0562 +
4126368-4128196,4128517-4128715,4128827-4128886,
4129129-4129233,4129987-4130127,4130223-4130285,
4130925-4131152,4131250-4131333,4132000-4132157,
4132252-4132777,4133641-4133700,4133904-4134026,
4134906-4135181,4135282-4135347,4135500-4135631,
4135977-4136798,4137026-4137306,4137564-4137796,
4138022-4138260,4138367-4138558,4138808-4139080,
4139186-4139332
Length = 2078
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = -2
Query: 359 VQPFRPLRRNSILQPEDLREPAANMSQRGLFTVVSCLHEGGNQPDWRGESLPADARLCHR 180
V+PF LRR ++ L EP+A ++QR F+ + P D R R
Sbjct: 194 VRPFASLRRGRVVVDAVLSEPSALVAQRKDFSWLGLPAPSEGSPKRHSGEEGIDYRTKTR 253
Query: 179 RLCR 168
RL R
Sbjct: 254 RLAR 257
>02_02_0285 + 8582033-8582201,8582375-8582652,8582762-8583394
Length = 359
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 400 GAADTPDNPHHCLLKQNFCHHGQHGTGEAAPVLLTAVSIAAIFCA 534
G + +P + H LL++ HG HG G P ++ + + A
Sbjct: 192 GMSSSPVDQKHVLLQEQLVAHGAHGGGFVVPAFEASMHLPQLASA 236
>07_03_1509 - 27246721-27247350
Length = 209
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 70 SARSCRRC*SPHGYSAQTSRTPATGCLPCCPVYR 171
S+R CR +P G + +S AT P CP R
Sbjct: 78 SSRLCRLARAPAGRAVASSSVAATSSTPACPPSR 111
>07_01_0753 - 5799733-5799741,5799938-5800642
Length = 237
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +2
Query: 215 PHANPAGCLLREDNSPR*TIPAGSYLPPVPVNPP 316
P A LL N P PA +Y PP P PP
Sbjct: 17 PSAQLGQPLLPPPNQPYYAFPAAAYAPPPPPPPP 50
>05_06_0081 + 25423847-25424302
Length = 151
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 630 GSLKSGWSEWEESAHGQYVAG 568
G L + W+E E HG YVAG
Sbjct: 78 GGLPAEWTELERRHHGSYVAG 98
>01_05_0738 +
24788278-24788521,24789192-24789510,24789888-24789946,
24790235-24790281
Length = 222
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -2
Query: 413 VSAAPLAGLLVAAHPRQAVQPFRPLRRNSILQPED 309
VSAAP AGLL+A+ R+ +R + + I P D
Sbjct: 37 VSAAPAAGLLMASRVRRRSAVYRDCKGDYIGVPND 71
>05_07_0210 + 28427167-28427589
Length = 140
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Frame = +1
Query: 544 KVCVAALFTCDILSV------GALFPLTPAGLQAAIQFPAKWSSAAQ 666
+ CVAA C +L GA+ P AA PA+WS Q
Sbjct: 30 RACVAAAAACAVLGTAGGPGEGAVMARAPEATAAAAAGPARWSDRRQ 76
>05_03_0608 +
16153992-16154960,16158959-16159168,16159252-16159512,
16160153-16160197,16160324-16160410,16160679-16160774
Length = 555
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +1
Query: 472 GTGEAAPVLLTAVSIAAIFCAIPSKVCVAALFTCDILSVGALFPLTPAGLQAAIQFPAKW 651
G E P+ S+A+ F + S AA ++ A FPL+P+ + + P+
Sbjct: 17 GDMETLPLASDYASVASTFDPLLSSAAAAASPPSPTIAAAAAFPLSPSSSSSFVDPPSYA 76
Query: 652 SSAA 663
AA
Sbjct: 77 DVAA 80
>04_04_0569 + 26293891-26294931
Length = 346
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 109 YSAQTSRTPATGCLPCCPVYRHNRRWHS 192
++ S P++ +P P+YRH++ W+S
Sbjct: 28 FTDSVSSWPSSEPMPFLPLYRHDKGWYS 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,342,109
Number of Sequences: 37544
Number of extensions: 548304
Number of successful extensions: 1880
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1879
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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