Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0349
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27925| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)               31   1.1  
SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_37303| Best HMM Match : Spc97_Spc98 (HMM E-Value=0)                 29   3.5  
SB_49131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_46871| Best HMM Match : PAN (HMM E-Value=1)                         28   8.1  

>SB_27925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 377 AHPRQAVQPFRPLRRNSILQPEDL 306
           AHPR    PFRP+R+  ++QP DL
Sbjct: 176 AHPRNV--PFRPVRQGHVVQPADL 197


>SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)
          Length = 245

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +2

Query: 575 TYCPWALSSHSLQPDFRLPSSFPR----SGLQPPR 667
           T CP  ++S S  P  R+ SSFP     SGL PPR
Sbjct: 104 TSCPCLVTSSSCIPSSRVASSFPHTTLLSGLLPPR 138


>SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1147

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 382 TNSPANGAADTPDNPHHCLLKQNFCHHGQ 468
           TN+ AN +++   N + CL   N C HGQ
Sbjct: 525 TNTLANISSNNSSNINECLADPNLCEHGQ 553


>SB_37303| Best HMM Match : Spc97_Spc98 (HMM E-Value=0)
          Length = 661

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +1

Query: 103 HGYSAQTSRTPATGCLPCCPVYRHNRRWHSRASAGKDSPRQSGWLPPS 246
           HG    ++ TPATG +P  P  R     HS  S+G  S + SG  P S
Sbjct: 58  HGLPLASTSTPATG-VPPLPGSRAISLVHSSHSSGFSSIQSSGTRPDS 104


>SB_49131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1163

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
 Frame = -3

Query: 217 GNLYRLMRGY------ATGGYVGTPGSMADSRXQASGTFEQNNHVVINNDGTNGQIGPAA 56
           GNL  L  GY       T GY G  GS+        G    +NH  I+    N   G   
Sbjct: 366 GNLGSLTNGYYGNLGSLTNGYYGNLGSLTMGNYDNFGFLANSNHGNIDLQ-ANSNHGNKV 424

Query: 55  LKAVYD-MARKGARDEIQT 2
           L A  D + RK ARD   T
Sbjct: 425 LLANCDRVIRKEARDVYST 443


>SB_46871| Best HMM Match : PAN (HMM E-Value=1)
          Length = 525

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 673 KRPGRLKTTSRETGWQPEVRLE*VGRE 593
           K  GRLKT S+E G+ P   L   GRE
Sbjct: 135 KAQGRLKTLSQERGYPPPKALNLRGRE 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,208,461
Number of Sequences: 59808
Number of extensions: 590953
Number of successful extensions: 1806
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1803
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)