Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0349
(684 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U56386-1|AAB72034.1| 561|Homo sapiens SH3 binding protein 3BP2 ... 32 1.7
BC022996-1|AAH22996.1| 561|Homo sapiens SH3BP2 protein protein. 32 1.7
AK126537-1|BAC86582.1| 467|Homo sapiens protein ( Homo sapiens ... 32 1.7
AK124073-1|BAC85767.1| 536|Homo sapiens protein ( Homo sapiens ... 32 1.7
AF000936-1|AAB59973.1| 561|Homo sapiens SH3 binding protein 2 p... 32 1.7
AB000462-1|BAA19119.1| 561|Homo sapiens SH3 binding protein pro... 32 1.7
BC008794-1|AAH08794.1| 984|Homo sapiens POM121 membrane glycopr... 31 3.8
AB014518-1|BAA31593.2| 1052|Homo sapiens KIAA0618 protein protein. 31 3.8
BC151206-1|AAI51207.1| 1837|Homo sapiens KIAA0913 protein protein. 30 6.7
BC117205-1|AAI17206.1| 1101|Homo sapiens KIAA0913 protein protein. 30 6.7
BC111006-1|AAI11007.1| 1231|Homo sapiens KIAA0913 protein protein. 30 6.7
BC040726-1|AAH40726.1| 349|Homo sapiens KIAA0913 protein protein. 30 6.7
AK130567-1|BAC85381.1| 145|Homo sapiens protein ( Homo sapiens ... 30 6.7
AK023742-1|BAB14664.1| 1081|Homo sapiens protein ( Homo sapiens ... 30 6.7
X56687-1|CAA40016.1| 727|Homo sapiens autoantigen NOR-90 protein. 30 8.8
X53461-1|CAA37548.1| 764|Homo sapiens protein ( Human mRNA for ... 30 8.8
X53390-1|CAA37469.1| 764|Homo sapiens protein ( Human mRNA for ... 30 8.8
U65487-1|AAC51239.1| 654|Homo sapiens ribosomal RNA upstream bi... 30 8.8
BC042297-1|AAH42297.1| 727|Homo sapiens upstream binding transc... 30 8.8
>U56386-1|AAB72034.1| 561|Homo sapiens SH3 binding protein 3BP2
protein.
Length = 561
Score = 32.3 bits (70), Expect = 1.7
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +2
Query: 149 CHAARCTDITAGGIAAHQPVKIPHANPAGCLLREDNSPR*TIPAGSYLPPVPVNPPVAK 325
C + ++ G +P +P P + E++ PR G ++PPV PP K
Sbjct: 331 CDKLKSFHLSPRGPPTSEPPPVPANKPKFLKIAEEDPPREAAMPGLFVPPVAPRPPALK 389
>BC022996-1|AAH22996.1| 561|Homo sapiens SH3BP2 protein protein.
Length = 561
Score = 32.3 bits (70), Expect = 1.7
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +2
Query: 149 CHAARCTDITAGGIAAHQPVKIPHANPAGCLLREDNSPR*TIPAGSYLPPVPVNPPVAK 325
C + ++ G +P +P P + E++ PR G ++PPV PP K
Sbjct: 331 CDKLKSFHLSPRGPPTSEPPPVPANKPKFLKIAEEDPPREAAMPGLFVPPVAPRPPALK 389
>AK126537-1|BAC86582.1| 467|Homo sapiens protein ( Homo sapiens
cDNA FLJ44573 fis, clone UTERU3016789, moderately
similar to SH3 domain-binding protein 3BP-2. ).
Length = 467
Score = 32.3 bits (70), Expect = 1.7
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +2
Query: 149 CHAARCTDITAGGIAAHQPVKIPHANPAGCLLREDNSPR*TIPAGSYLPPVPVNPPVAK 325
C + ++ G +P +P P + E++ PR G ++PPV PP K
Sbjct: 306 CDKLKSFHLSPRGPPTSEPPPVPANKPKFLKIAEEDPPREAAMPGLFVPPVSPRPPALK 364
>AK124073-1|BAC85767.1| 536|Homo sapiens protein ( Homo sapiens
cDNA FLJ42079 fis, clone SYNOV2021320, highly similar
to SH3 DOMAIN-BINDING PROTEIN 3BP-2. ).
Length = 536
Score = 32.3 bits (70), Expect = 1.7
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +2
Query: 149 CHAARCTDITAGGIAAHQPVKIPHANPAGCLLREDNSPR*TIPAGSYLPPVPVNPPVAK 325
C + ++ G +P +P P + E++ PR G ++PPV PP K
Sbjct: 306 CDKLKSFHLSPRGPPTSEPPPVPANKPKFLKIAEEDPPREAAMPGLFVPPVAPRPPALK 364
>AF000936-1|AAB59973.1| 561|Homo sapiens SH3 binding protein 2
protein.
Length = 561
Score = 32.3 bits (70), Expect = 1.7
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +2
Query: 149 CHAARCTDITAGGIAAHQPVKIPHANPAGCLLREDNSPR*TIPAGSYLPPVPVNPPVAK 325
C + ++ G +P +P P + E++ PR G ++PPV PP K
Sbjct: 331 CDKLKSFHLSPRGPPTSEPPPVPANKPKFLKIAEEDPPREAAMPGLFVPPVAPRPPALK 389
>AB000462-1|BAA19119.1| 561|Homo sapiens SH3 binding protein
protein.
Length = 561
Score = 32.3 bits (70), Expect = 1.7
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +2
Query: 149 CHAARCTDITAGGIAAHQPVKIPHANPAGCLLREDNSPR*TIPAGSYLPPVPVNPPVAK 325
C + ++ G +P +P P + E++ PR G ++PPV PP K
Sbjct: 331 CDKLKSFHLSPRGPPTSEPPPVPANKPKFLKIAEEDPPREAAMPGLFVPPVAPRPPALK 389
>BC008794-1|AAH08794.1| 984|Homo sapiens POM121 membrane
glycoprotein (rat) protein.
Length = 984
Score = 31.1 bits (67), Expect = 3.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 385 NSPANGAADTPDNPHHCLLKQNFCHHGQHGTGEAA 489
+SPA+ + TP+ P + ++ CHH T AA
Sbjct: 173 SSPASSRSQTPERPAKKIREEELCHHSSSSTPLAA 207
>AB014518-1|BAA31593.2| 1052|Homo sapiens KIAA0618 protein protein.
Length = 1052
Score = 31.1 bits (67), Expect = 3.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 385 NSPANGAADTPDNPHHCLLKQNFCHHGQHGTGEAA 489
+SPA+ + TP+ P + ++ CHH T AA
Sbjct: 226 SSPASSRSQTPERPAKKIREEELCHHSSSSTPLAA 260
>BC151206-1|AAI51207.1| 1837|Homo sapiens KIAA0913 protein protein.
Length = 1837
Score = 30.3 bits (65), Expect = 6.7
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -2
Query: 374 HPRQAVQPFRPLRRNSILQPEDLREPAANMSQRGLFTVVSCLHEGGNQPDWRGESLP 204
HP A+QP P + P P +M + +F V S + G P + G P
Sbjct: 1506 HPYTALQPHLPCSPQYLTHPAHPAHPMPHMPRPAVFPVPSSAYPQGVHPAFLGAQYP 1562
>BC117205-1|AAI17206.1| 1101|Homo sapiens KIAA0913 protein protein.
Length = 1101
Score = 30.3 bits (65), Expect = 6.7
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -2
Query: 374 HPRQAVQPFRPLRRNSILQPEDLREPAANMSQRGLFTVVSCLHEGGNQPDWRGESLP 204
HP A+QP P + P P +M + +F V S + G P + G P
Sbjct: 778 HPYTALQPHLPCSPQYLTHPAHPAHPMPHMPRPAVFPVPSSAYPQGVHPAFLGAQYP 834
>BC111006-1|AAI11007.1| 1231|Homo sapiens KIAA0913 protein protein.
Length = 1231
Score = 30.3 bits (65), Expect = 6.7
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -2
Query: 374 HPRQAVQPFRPLRRNSILQPEDLREPAANMSQRGLFTVVSCLHEGGNQPDWRGESLP 204
HP A+QP P + P P +M + +F V S + G P + G P
Sbjct: 845 HPYTALQPHLPCSPQYLTHPAHPAHPMPHMPRPAVFPVPSSAYPQGVHPAFLGAQYP 901
>BC040726-1|AAH40726.1| 349|Homo sapiens KIAA0913 protein protein.
Length = 349
Score = 30.3 bits (65), Expect = 6.7
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -2
Query: 374 HPRQAVQPFRPLRRNSILQPEDLREPAANMSQRGLFTVVSCLHEGGNQPDWRGESLP 204
HP A+QP P + P P +M + +F V S + G P + G P
Sbjct: 18 HPYTALQPHLPCSPQYLTHPAHPAHPMPHMPRPAVFPVPSSAYPQGVHPAFLGAQYP 74
>AK130567-1|BAC85381.1| 145|Homo sapiens protein ( Homo sapiens
cDNA FLJ27057 fis, clone SPL00704. ).
Length = 145
Score = 30.3 bits (65), Expect = 6.7
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -2
Query: 290 NMSQRGL--FTVVSCLHEGGNQPDWRGES 210
++S GL FTV+ C HE + P WRG S
Sbjct: 62 SLSPPGLINFTVMHCSHEADSGPRWRGRS 90
>AK023742-1|BAB14664.1| 1081|Homo sapiens protein ( Homo sapiens
cDNA FLJ13680 fis, clone PLACE2000007, highly similar to
Homo sapiens mRNA for KIAA0913 protein. ).
Length = 1081
Score = 30.3 bits (65), Expect = 6.7
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -2
Query: 374 HPRQAVQPFRPLRRNSILQPEDLREPAANMSQRGLFTVVSCLHEGGNQPDWRGESLP 204
HP A+QP P + P P +M + +F V S + G P + G P
Sbjct: 750 HPYTALQPHLPCSPQYLTHPAHPAHPMPHMPRPAVFPVPSSAYPQGVHPAFLGAQYP 806
>X56687-1|CAA40016.1| 727|Homo sapiens autoantigen NOR-90 protein.
Length = 727
Score = 29.9 bits (64), Expect = 8.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 681 RAEKDLGG*RPLRGKLDGSLKSGWSEWEESAHGQYVA 571
++E+ GG R RGKL S K W++S G Y+A
Sbjct: 429 QSERKPGGEREERGKLPESPKRAEEIWQQSVIGDYLA 465
>X53461-1|CAA37548.1| 764|Homo sapiens protein ( Human mRNA for
upstream binding factor (hUBF). ).
Length = 764
Score = 29.9 bits (64), Expect = 8.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 681 RAEKDLGG*RPLRGKLDGSLKSGWSEWEESAHGQYVA 571
++E+ GG R RGKL S K W++S G Y+A
Sbjct: 466 QSERKPGGEREERGKLPESPKRAEEIWQQSVIGDYLA 502
>X53390-1|CAA37469.1| 764|Homo sapiens protein ( Human mRNA for
upstream binding factor (hUBF). ).
Length = 764
Score = 29.9 bits (64), Expect = 8.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 681 RAEKDLGG*RPLRGKLDGSLKSGWSEWEESAHGQYVA 571
++E+ GG R RGKL S K W++S G Y+A
Sbjct: 466 QSERKPGGEREERGKLPESPKRAEEIWQQSVIGDYLA 502
>U65487-1|AAC51239.1| 654|Homo sapiens ribosomal RNA upstream
binding transcription factor protein.
Length = 654
Score = 29.9 bits (64), Expect = 8.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 681 RAEKDLGG*RPLRGKLDGSLKSGWSEWEESAHGQYVA 571
++E+ GG R RGKL S K W++S G Y+A
Sbjct: 308 QSERKPGGEREERGKLPESPKRAEEIWQQSVIGDYLA 344
>BC042297-1|AAH42297.1| 727|Homo sapiens upstream binding
transcription factor, RNA polymerase I protein.
Length = 727
Score = 29.9 bits (64), Expect = 8.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 681 RAEKDLGG*RPLRGKLDGSLKSGWSEWEESAHGQYVA 571
++E+ GG R RGKL S K W++S G Y+A
Sbjct: 429 QSERKPGGEREERGKLPESPKRAEEIWQQSVIGDYLA 465
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,090,033
Number of Sequences: 237096
Number of extensions: 2733165
Number of successful extensions: 8028
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8010
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -