Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0349
         (684 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2636|AAF55643.2|  426|Drosophila melanogaster CG5558-PB...    33   0.48 
AY118508-1|AAM49877.1|  973|Drosophila melanogaster LD13350p pro...    31   1.9  
AE014297-1738|AAN13588.1|  954|Drosophila melanogaster CG9351-PC...    31   1.9  
AE014297-1737|AAN13587.1|  954|Drosophila melanogaster CG9351-PB...    31   1.9  
AE014297-1736|AAF54974.1|  954|Drosophila melanogaster CG9351-PA...    31   1.9  

>AE014297-2636|AAF55643.2|  426|Drosophila melanogaster CG5558-PB,
           isoform B protein.
          Length = 426

 Score = 32.7 bits (71), Expect = 0.48
 Identities = 23/75 (30%), Positives = 35/75 (46%)
 Frame = -2

Query: 419 SGVSAAPLAGLLVAAHPRQAVQPFRPLRRNSILQPEDLREPAANMSQRGLFTVVSCLHEG 240
           S ++A  +  L+VA +  +A +   P     + Q ED    AA   +  L   +  LH+ 
Sbjct: 84  SVLTAVVVVNLVVAMYVLKAFREKPPPPLEPVQQDEDDEPEAAEPKKEHLAEALDYLHKS 143

Query: 239 GNQPDWRGESLPADA 195
               DWR + LPADA
Sbjct: 144 ----DWRRKELPADA 154


>AY118508-1|AAM49877.1|  973|Drosophila melanogaster LD13350p protein.
          Length = 973

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -2

Query: 620  SPAGVSGKRAPTDSMSQVKSAATQTFDGIAQNMAAMLTAVSRTGAASPVPCCP 462
            SP G S   +  DS +    AA+Q    IA  MAA +TA + T ++  +   P
Sbjct: 842  SPPGSSAAASLCDSATVAAVAASQFLSTIATAMAASVTAAAATNSSPSISPAP 894


>AE014297-1738|AAN13588.1|  954|Drosophila melanogaster CG9351-PC,
           isoform C protein.
          Length = 954

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -2

Query: 620 SPAGVSGKRAPTDSMSQVKSAATQTFDGIAQNMAAMLTAVSRTGAASPVPCCP 462
           SP G S   +  DS +    AA+Q    IA  MAA +TA + T ++  +   P
Sbjct: 823 SPPGSSAAASLCDSATVAAVAASQFLSTIATAMAASVTAAAATNSSPSISPAP 875


>AE014297-1737|AAN13587.1|  954|Drosophila melanogaster CG9351-PB,
           isoform B protein.
          Length = 954

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -2

Query: 620 SPAGVSGKRAPTDSMSQVKSAATQTFDGIAQNMAAMLTAVSRTGAASPVPCCP 462
           SP G S   +  DS +    AA+Q    IA  MAA +TA + T ++  +   P
Sbjct: 823 SPPGSSAAASLCDSATVAAVAASQFLSTIATAMAASVTAAAATNSSPSISPAP 875


>AE014297-1736|AAF54974.1|  954|Drosophila melanogaster CG9351-PA,
           isoform A protein.
          Length = 954

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -2

Query: 620 SPAGVSGKRAPTDSMSQVKSAATQTFDGIAQNMAAMLTAVSRTGAASPVPCCP 462
           SP G S   +  DS +    AA+Q    IA  MAA +TA + T ++  +   P
Sbjct: 823 SPPGSSAAASLCDSATVAAVAASQFLSTIATAMAASVTAAAATNSSPSISPAP 875


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,296,430
Number of Sequences: 53049
Number of extensions: 857727
Number of successful extensions: 2924
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2922
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)