Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0349
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z68131-2|CAA92218.1|  614|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U39999-8|AAY44011.1|  146|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U80450-4|AAB37829.1|  926|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
           protein F35A5.1 protein.
          Length = 1274

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 248 EDNSPR*TIPAGSYLPPVPVNPPVAKW 328
           +D +P+   P    +PP PV  PV KW
Sbjct: 647 KDTAPKKAEPNSPVVPPTPVKNPVKKW 673



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 203 PVKIPHANPAGCLLREDNSPR*TIPAGSYLPPVPVNPPVAKW 328
           PV +    P      ++ SP+   P    +PP PV  PV KW
Sbjct: 851 PVSVKKPEPVS--KPKEPSPKKAEPNSPVVPPTPVKNPVKKW 890



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = +2

Query: 212  IPHANPAGCLLR-EDNSPR*TIPAGSYL---PPVPVNPPVAKW 328
            +P   PA    +  D SP+  IP  +     PP PV  PV KW
Sbjct: 944  VPEKEPAKVAAKPRDLSPKKAIPIPANTQEAPPTPVKNPVKKW 986


>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
            F45E4.4 protein.
          Length = 2361

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 653  DHFAGNWMAA*SPAGVSGKRAPTDSMSQVKSAATQ 549
            D    N +A  +P+ VS +R P DS + VKS   Q
Sbjct: 1861 DEIYDNVIATEAPSSVSQRRQPVDSETSVKSRTIQ 1895


>Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical
           protein K01A6.2 protein.
          Length = 1092

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 32  GHVIHRLQSSRTYLPVRAVVVNHHMVILLKRPGRLXPA 145
           GH +     S   + + A   N H+ ++++RP R  PA
Sbjct: 809 GHNVEGASHSEAVVLLEAAAQNKHVKLIVRRPSRTDPA 846


>Z68131-2|CAA92218.1|  614|Caenorhabditis elegans Hypothetical
           protein B0395.3 protein.
          Length = 614

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 467 STERVKLRQF---CSLPSASPPYSVQYHQRSAWLHFLPATYCPWALSS 601
           ST +V  R F   C  PSA   Y + Y+ +   LHF+ +T+  +  +S
Sbjct: 538 STSQVPTRHFIQMCFGPSALDCYGICYNPQETELHFMISTFKSYGSTS 585


>U39999-8|AAY44011.1|  146|Caenorhabditis elegans Hypothetical
           protein F41G3.19 protein.
          Length = 146

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 355 CTA*RGCAATNSPANGAADTPDNPHHC 435
           CT   GC    +P+NG +D P    +C
Sbjct: 41  CTVSWGCVDLTNPSNGVSDCPKMASYC 67


>U80450-4|AAB37829.1|  926|Caenorhabditis elegans Hypothetical
           protein M01E11.3 protein.
          Length = 926

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 284 SYLPPVPVNPPVAKWNF 334
           S LPP PV PP   WN+
Sbjct: 690 SILPPPPVIPPSQNWNY 706


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,005,170
Number of Sequences: 27780
Number of extensions: 387018
Number of successful extensions: 1179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)