Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0349
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05330.1 68415.m00561 speckle-type POZ protein-related contai...    33   0.13 
At3g62570.1 68416.m07029 DNAJ heat shock N-terminal domain-conta...    29   2.9  
At4g31350.1 68417.m04446 expressed protein contains Pfam profile...    29   3.8  
At1g60530.1 68414.m06814 dynamin family protein similar to mx2 p...    27   8.8  
At1g60500.1 68414.m06811 dynamin family protein similar to RBTMx...    27   8.8  

>At2g05330.1 68415.m00561 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain
          Length = 215

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 115 AQTSRTPATGCLPCCPVYRHNRRWHSRASAGKDSPRQS 228
           A  +RTP+T C  C  +  HN+   S  S G D PR+S
Sbjct: 178 ASLTRTPSTSCSRCGLITYHNQTGTSCCSCGFDYPRRS 215


>At3g62570.1 68416.m07029 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profiles
           PF00226: DnaJ domain, PF00515: TPR Domain
          Length = 552

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = -2

Query: 680 EQKKTWAAEDHFAGNWMAA*SPAGVSGKRAPTDSMSQVKSAATQTFDGI-AQNMAAMLTA 504
           EQ+K        +   +    P   SG    TD  +++K   +  + G+  +++AA+ + 
Sbjct: 475 EQRKKMMVLTQMSTKTVEEHEPVEKSGSITLTD-FAEIKPGNSNAYQGVFCRDLAAVGSL 533

Query: 503 VSRTGAASPVP 471
           +SRTG   P+P
Sbjct: 534 LSRTGFNQPIP 544


>At4g31350.1 68417.m04446 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 711

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 415 PDNPHHCLLKQNFCHHGQHGTGEAAPVLLTAV 510
           PDN H  LL  +F   G HG+G  +  +L  V
Sbjct: 533 PDNQHFILLSDSFEDPGPHGSGRYSQHMLPEV 564


>At1g60530.1 68414.m06814 dynamin family protein similar to mx2
           protein GI:5578742 from [Mus musculus musculus];
           contains Pfam profile PF00350: Dynamin family
          Length = 301

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 288 ICRRFP*ILRLQNGISPQRPEWL 356
           IC R P ++RLQ   SP+   WL
Sbjct: 93  ICTRVPLVMRLQRSSSPEPEIWL 115


>At1g60500.1 68414.m06811 dynamin family protein similar to RBTMx2
           [Oncorhynchus mykiss] GI:1399452; contains Pfam profiles
           PF01031: Dynamin central region, PF00350: Dynamin
           family, PF02212: Dynamin GTPase effector domain
          Length = 669

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 288 ICRRFP*ILRLQNGISPQRPEWL 356
           IC R P ++RLQ   SP+   WL
Sbjct: 96  ICTRVPLVMRLQRSSSPEPEIWL 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,347,119
Number of Sequences: 28952
Number of extensions: 367813
Number of successful extensions: 1035
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)